View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6244_high_1 (Length: 509)
Name: NF6244_high_1
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6244_high_1 |
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| [»] scaffold0597 (1 HSPs) |
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| [»] scaffold0941 (1 HSPs) |
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| [»] scaffold0548 (1 HSPs) |
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| [»] scaffold0098 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: scaffold0597 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: scaffold0597
Description:
Target: scaffold0597; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4505 - 4245
Alignment:
| Q |
1 |
ttattgactctatttgtaatcaagtttggaacaacttcttctatccatccattttgaattatattagaactatttgtaaacatatgggtaaaatggttaa |
100 |
Q |
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| T |
4505 |
ttattgactctatttgtaatctagtttggaacaacttcttctatcaatccattttgaataatattagaactatttgtaaacatatttgtaaaatggataa |
4406 |
T |
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| Q |
101 |
caacatctgctgaaattaactcagggtcattcagtgtgatatctccactcttcatggtatttatgtgacttgcaacatttctgatcttggccactctatg |
200 |
Q |
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| T |
4405 |
caacatgtgctgaaattaacttagggtcattcatcgtgatatctccactcttcatggtatttatgtgacttgaaacatttctgatcttggccactctatg |
4306 |
T |
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| Q |
201 |
aaaataagaagtattcctatccccttcacaatgccatttcacttttgatttttcatgccaa |
261 |
Q |
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| T |
4305 |
aaaatatgaagtattcctatccccttcacaatgccatttcacttttgatttttcatgccaa |
4245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0941 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 430
Target Start/End: Complemental strand, 2660 - 2411
Alignment:
| Q |
182 |
tgatcttggccactctatgaaaataagaagtattcctatccccttcacaatgccatttcacttttgatttttcatgccaaaacatttcttcaacattcaa |
281 |
Q |
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| T |
2660 |
tgatctttgcaactctatgaaagaaagctgtgtttctgtctccttcacaatgccaattaacttttgatttttcatgccagaagacctcttctatgttcaa |
2561 |
T |
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| Q |
282 |
agcattttccaaattgatttgagcaactttttcttgatccataagcaaattaga-tatgcagtattatcaattttcatttgaatgtcatctaattctttg |
380 |
Q |
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| T |
2560 |
agcactctctaaattcaattgagcagccttttcttgatccattagaacatcagagtatccaatactatcaatcttcacttgaatatcatcaagttctttg |
2461 |
T |
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| Q |
381 |
taagcagatgtgacttgagtatgaacattaccaaatgtattctttttcca |
430 |
Q |
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| T |
2460 |
tatgcattatcaacttgagagtgaacattaccaaaagtattcttgttcca |
2411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0548 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0548
Description:
Target: scaffold0548; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 326
Target Start/End: Original strand, 1744 - 1847
Alignment:
| Q |
223 |
ccttcacaatgccatttcacttttgatttttcatgccaaaacatttcttcaacattcaaagcattttccaaattgatttgagcaactttttcttgatcca |
322 |
Q |
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| T |
1744 |
ccttcacaatgccacttgacttttgatttttcatgctagaagatttcttctatattcagagcattttctaagttcacttgagcaatcttttcttggtcca |
1843 |
T |
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| Q |
323 |
taag |
326 |
Q |
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|||| |
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| T |
1844 |
taag |
1847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 223 - 326
Target Start/End: Original strand, 15089855 - 15089958
Alignment:
| Q |
223 |
ccttcacaatgccatttcacttttgatttttcatgccaaaacatttcttcaacattcaaagcattttccaaattgatttgagcaactttttcttgatcca |
322 |
Q |
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|||||||||||||| || |||||||||||||||||| | || |||||||| | ||||| ||||||||| || || | |||||||| |||||||| |||| |
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| T |
15089855 |
ccttcacaatgccacttgacttttgatttttcatgctagaagatttcttctatattcagagcattttctaagttcacttgagcaatcttttcttggtcca |
15089954 |
T |
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| Q |
323 |
taag |
326 |
Q |
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|||| |
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| T |
15089955 |
taag |
15089958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 323
Target Start/End: Original strand, 32561 - 32702
Alignment:
| Q |
182 |
tgatcttggccactctatgaaaataagaagtattcctatccccttcacaatgccatttcacttttgatttttcatgccaaaacatttcttcaacattcaa |
281 |
Q |
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||||||| || ||| |||||||| ||| || || || || ||||||||||||||||| |||||||||||||||||| | || | |||||| | ||||| |
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| T |
32561 |
tgatctttgcaactatatgaaaaaaagctgtgtttctgtctccttcacaatgccatttaacttttgatttttcatgcgagaagacttcttctatgttcaa |
32660 |
T |
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| Q |
282 |
agcattttccaaattgatttgagcaactttttcttgatccat |
323 |
Q |
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| T |
32661 |
agcactctctaaattcaattgagcagccttttcttgatccat |
32702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 27908 - 27864
Alignment:
| Q |
195 |
tctatgaaaataagaagtattcctatccccttcacaatgccattt |
239 |
Q |
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| T |
27908 |
tctatgaaaataagcagtattcctatccccttcactatgccattt |
27864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 22211616 - 22211556
Alignment:
| Q |
214 |
ttcctatccccttcacaatgccatttcacttttgatttttcatgccaaaacatttcttcaa |
274 |
Q |
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| T |
22211616 |
ttcctatctccttctaaatgccatctaacttttgatttttcttgccaaaaaatttcttcaa |
22211556 |
T |
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