View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6244_high_16 (Length: 258)
Name: NF6244_high_16
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6244_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41563248 - 41563490
Alignment:
| Q |
1 |
agtgtacaaactagacttttgacatttcaaactcttatgccaaacttctatcataatcttgcataggtaggcgcttacatcatattcatatgaataaata |
100 |
Q |
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| T |
41563248 |
agtgtacaaactagacttttgacatttaaaactcttatgccaaacttctatcataatcttgcataggtaggcgcttacatcatattcatatgaataaata |
41563347 |
T |
|
| Q |
101 |
aataattaatattgttctaaagtaaataagtgcattatagaaatcttcattcaatcattcattcc-aaaaaataaaatggagtctcaagcacctcaactt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41563348 |
aataattaatattgttctaaagtaaataagtgcattatagaaatcttcattcaatcattcattccaaaaaaataaaatggagtctcaagcacctcaactt |
41563447 |
T |
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| Q |
200 |
cactttgtgttatttctacttatgtccccaggacacatgcttc |
242 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41563448 |
cactttgtgttatttccacttatgtccccaggacacatgcttc |
41563490 |
T |
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