View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6244_high_2 (Length: 480)
Name: NF6244_high_2
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6244_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 49117242 - 49116778
Alignment:
| Q |
1 |
ggggttaatcactgtgatttttacaaaagctgcccgcagctcaccgtgattttgacaaatacaaacatacagtcatttaatattgtatgtgatatgccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49117242 |
ggggttaatcactgtgatttttacaaaagctgccagcagctcaccgtgattttgacaaatacaaacatacagtcatttaatattgtatgtgatatgccat |
49117143 |
T |
|
| Q |
101 |
ttattgaatcagggaatgacaacaataggaggctgcagatacaggcaggccattcccgtaggacttggaggacgcttagatattgatgcaaattatggta |
200 |
Q |
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| T |
49117142 |
ttattgaatcagggaatgacaacaataggaggctgcagatacaggcaggccattcccgtaggacttggaggacgcttagatattgatgcaaattatggta |
49117043 |
T |
|
| Q |
201 |
tcaggaaatctttcctcccacaggtattaataacacaaacataatatatattgttatgaatttagcttgtggtgtgcgtaattgnnnnnnnaaagtttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49117042 |
tcaggaaatctttcctcccacaggtattaataacacaaacataatatatattgttatgaatttagcttgtggtgtgcgtaattgtttttttaaagtttaa |
49116943 |
T |
|
| Q |
301 |
agtactattgagattcaattagttcttttaactttaaaaagtgtaattttgatctctaagttaaatttgttggtgcaagtaagtcatttccgaccaatct |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49116942 |
agtactattgagattcaattagttc-tttaactttaaaaagtataattttcatctctaagttaaatttgttggtgcaagtaagtcatttccgaccaatct |
49116844 |
T |
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| Q |
401 |
ataaaatgaatagacaaaatggttaaaagaaaataacaacatcatcataccctaacgtttggaccc |
466 |
Q |
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| T |
49116843 |
ataaaatgaatagacaaaatggttaaaagaaaataacaacatcatcataccctaacgtttggaccc |
49116778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 103 - 227
Target Start/End: Complemental strand, 49104768 - 49104644
Alignment:
| Q |
103 |
attgaatcagggaatgacaacaataggaggctgcagatacaggcaggccattcccgtaggacttggaggacgcttagatattgatgcaaattatggtatc |
202 |
Q |
| |
|
||||||| ||||||||||||||| |||||| || |||||||||||| ||||||| |||| ||||||||||| |||||| | |||||||| || |||||| |
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| T |
49104768 |
attgaattagggaatgacaacaacaggaggatgtagatacaggcagaccattcctatagggcttggaggacgtttagatgtcgatgcaaactacggtatc |
49104669 |
T |
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| Q |
203 |
aggaaatctttcctcccacaggtat |
227 |
Q |
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|||||| ||||||| |||||||||| |
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| T |
49104668 |
aggaaagctttcctaccacaggtat |
49104644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 6955456 - 6955536
Alignment:
| Q |
103 |
attgaatcagggaatgacaacaataggaggctgcagatacaggcaggccattcccgtaggacttggaggacgcttagatat |
183 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||||||||||||| || || || ||||||| ||||| ||||| |
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| T |
6955456 |
attgaatcagggaatgacaacagcaggatattgcagatacaggcaggccatacctgttggttttggaggtcgcttggatat |
6955536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 6965802 - 6965922
Alignment:
| Q |
107 |
aatcagggaatgacaacaataggaggctgcagatacaggcaggccattcccgtaggacttggaggacgcttagatattgatgcaaattatggtatcagga |
206 |
Q |
| |
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|||||||||||||||||| ||||| |||||||| ||||||||||| || || || ||||||| ||||| ||||| ||| | || ||||| ||| | | |
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| T |
6965802 |
aatcagggaatgacaacagcaggagattgcagatataggcaggccatacctgttggttttggaggtcgcttggatatcgatactaactatggcatccgta |
6965901 |
T |
|
| Q |
207 |
aatctttcctcccacaggtat |
227 |
Q |
| |
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|| ||||||| |||| ||||| |
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| T |
6965902 |
aagctttccttccacgggtat |
6965922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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