View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6244_high_3 (Length: 460)
Name: NF6244_high_3
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6244_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 70 - 452
Target Start/End: Original strand, 5929136 - 5929518
Alignment:
| Q |
70 |
aggggaaggggacctttctttctagtttatacatgcaataatttagaggatatattgcggaatttgtgactccaaatatgtccactcagatagtttattt |
169 |
Q |
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| T |
5929136 |
aggggaaggggacctttctttctagtttatacatgcaataatttagaggatatattgcggaatttgtgactccaaatatgtccactcagatagtttattt |
5929235 |
T |
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| Q |
170 |
tccactcgtgagttcttgtcatctagcaaccgtaggtaggtatatatcaaaatcacattaatcaaaataggagctatacaatcagaaatttaaataaaaa |
269 |
Q |
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| T |
5929236 |
tccactcgtgagttcttgtcatctagcaaccgtaggtaggtatatatcaaaatcacattaatcaaaataggagctatacaatcagaaattttaaaaaaaa |
5929335 |
T |
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| Q |
270 |
tggagaaaacaaacaatctctagtgatgaaattataaggagacaaattcagacataaattatcttcttcgattgaatctaacaaaggaatttacaaaagt |
369 |
Q |
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| T |
5929336 |
tggagaaaacaaacaatctctagtgatgaaattataaggagacaaattcagacataaattatcttcttcgattgaatctaacaaaggaatttacaaaagt |
5929435 |
T |
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| Q |
370 |
aaataaataaaaaatcagcatcctcatgacataaattgctatagattgcaacctcatcccaacacgtgaagtgcatattcttc |
452 |
Q |
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| T |
5929436 |
aaataaataaaaaatcagcatcctcatgacataaattgctatagattgcaacctcatcccaacacgtgaagtgcatatgcttc |
5929518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 5929105 - 5929135
Alignment:
| Q |
17 |
actaacagtattgattattgagaaaaggata |
47 |
Q |
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| T |
5929105 |
actaacagtattgattattgagaaaaggata |
5929135 |
T |
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