View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6244_high_5 (Length: 421)
Name: NF6244_high_5
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6244_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 52761290 - 52760897
Alignment:
| Q |
12 |
catcactaagctgttgatatttaattgtttgtgtttagagaagacaattagattcaagtttataattccttatttgtttttaccattttaggttggggag |
111 |
Q |
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| T |
52761290 |
catcaccaagctgttgatatttaattgtttgtgtttagagaagacaattagattcaagtttataattccttatttgtttttaccattttaggttggggag |
52761191 |
T |
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| Q |
112 |
tttttctcttcggcacaaattagtgcagcaactcgccagagagagcttgaagttcaacaaccatctgttgaagggtctattgactgtccattattaatgg |
211 |
Q |
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| T |
52761190 |
tttttctcttcggcacaaattagtgcagcaactcgccagagagagcttgaagttcaacaaccatctgttgaagggtctattgactgtccattattaatgg |
52761091 |
T |
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| Q |
212 |
aacaagtataccctacaactttgtagtttatattcataatgtcatttgttgatgatgcttagaaattttatgacttgtaggagacgacagcatatccagt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52761090 |
aacaagtataccctacaactttgtagtttatattcataatgtcatttattgatgatgcttagaaattttatgacttgtaggagacgacagcatatccagt |
52760991 |
T |
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| Q |
312 |
aaagcagataaaattggggtttataaccggtcttgttactagggaaaaatcaattcctttcgaaagaattctatttcgtgctactagaggaaat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52760990 |
aaagcagataaaattggggtttataaccggtcttgttactagggaaaaatcaattccttttgaaagaattctatttcgtgctactagaggaaat |
52760897 |
T |
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