View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6244_high_6 (Length: 398)
Name: NF6244_high_6
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6244_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 52761340 - 52761735
Alignment:
| Q |
1 |
ctataagttcattataagtgtgctgcaacttctcattgtttgaattaatctcaattagctcagcttcaagttctgctagtttaacctatatccatgaaga |
100 |
Q |
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| T |
52761340 |
ctataagttcattataagtgtgctgcaacttctcattgtttgaattaatctcaattagctcggcttcaagttctgctagtttaacctatatccatgaaga |
52761439 |
T |
|
| Q |
101 |
aaaattgtgttgcatggcaatgctatcttaaatgtacggtagaaaagatatgaaaattttaaaaacacctgacaacctccaatttttctagatcaataga |
200 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52761440 |
aaaattgtgttacatggcaatgctctcttaaatgtacggtagaaaagatatgaaaattttaaaaacacctgacaacctccaatttttctagatcaataga |
52761539 |
T |
|
| Q |
201 |
accatctctcgttgaccatgttgacggagatatatttgccattttcatttgctccttaaataaacgcaacttacgggacattgccccacatcttttaacc |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
52761540 |
accatctcttgttgaccatgttgacggagatatatttgcctttttcatttgctccttaaataaacgcaacttacgcgacatttccccacatcttttaacc |
52761639 |
T |
|
| Q |
301 |
tatttgataaagccgtaagctttccaatctggtctagtaaatctgttgtgtaaaatgtctcataataaaaatgttagcagaattagatttcatgat |
396 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52761640 |
tatttgataaaaccgtaagctttccaatctggtctagtaaatcagttgtgtaaaatgtctcataataaaaatgttagcagaattagatttcatgat |
52761735 |
T |
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