View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6244_low_11 (Length: 326)
Name: NF6244_low_11
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6244_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 28425698 - 28425870
Alignment:
| Q |
131 |
ccgctttgcagatctagcttctcatgctttgagctgccagcaacccatatattaactatagagtttacttgctttgattctcagctctagttattctcta |
230 |
Q |
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| T |
28425698 |
ccgctttgca-atctaacttctcatgttttgagctgccaacaacccatatattgactatagagtttacttgctttgattctcagctctagttattctcca |
28425796 |
T |
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| Q |
231 |
tcgctatatatgtaatgggattcccatcgtattgccatgtctatgacatatatgtatattttgattccaatacattattt |
310 |
Q |
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| T |
28425797 |
tcgctatatatgtaattggattcccatcgtattgctatgtctatgaca------tatattttgattccaatacattattt |
28425870 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 2955940 - 2955883
Alignment:
| Q |
130 |
accgctttgcagatctagcttctcatgctttgagctgccag--caacccatatattaa |
185 |
Q |
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| T |
2955940 |
accgctttgcagatctaacttctcatgtcttgagctgccagtataacccatatattaa |
2955883 |
T |
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