View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6244_low_12 (Length: 322)
Name: NF6244_low_12
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6244_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 205 - 304
Target Start/End: Original strand, 36684867 - 36684966
Alignment:
| Q |
205 |
aaaggttttgtaactctgatgatagtcatctgcaagttgaagtgttccatgtgaggaggcttgaagtactccaaaatagtagcctcccaggtttcttggt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
36684867 |
aaaggttttgtaactctgatgatagtcatctgcaagttgaagtgttccatgtgaggaggcttgaagtactccaaaatagtagcctaccagctttcttggt |
36684966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 36684102 - 36684191
Alignment:
| Q |
17 |
ttggtgggtagtttttgtggcaatgattcgttgaaattccctacgtaccttcaagccattatatatcaaacactcccataaacattgatctggt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
36684102 |
ttggtgggtagtttttgtggcaatgattcattgaaattccctacgtaccttcaagccat----tctcaaacactcccataaacattgatctggt |
36684191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 36684198 - 36684241
Alignment:
| Q |
167 |
acttgttgtagttaccttattataaacgttttgactttaaaggt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684198 |
acttgttgtagttaccttattataaacgttttgactttaaaggt |
36684241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University