View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6244_low_15 (Length: 262)
Name: NF6244_low_15
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6244_low_15 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 41562884 - 41563136
Alignment:
| Q |
11 |
cagagaagaaacaaagctaaagagataaaagatatggcttataaggctgttgaagatggtggatcttctgattcaaattgcaaattgtttatacaaga-- |
108 |
Q |
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| T |
41562884 |
cagagaagaaacaaagcaaaagagataaaagatatggcttataaggctgttgaagatggtggatcttctgattcaaattgcaaattgtttatacaagaga |
41562983 |
T |
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| Q |
109 |
aattgtagagaaaagttcataatcaatgattaagcataccaaaatagttctattgtgacaatagattatgtcatcagagactaatttataaaagacttga |
208 |
Q |
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| T |
41562984 |
aattgtagagaaaagttcataatcaat-attaagcataccaaaaaagttctattgtgacaatagattatgtcatcagagactaatttataaaagacttga |
41563082 |
T |
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| Q |
209 |
ctttacaaatttaaagtgacaaataagtctttaatgatgatgtcagatccactt |
262 |
Q |
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| T |
41563083 |
ctttacaaatttaaagtgacacataagtctttaatgatgatgtcagatccactt |
41563136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 46657195 - 46657264
Alignment:
| Q |
61 |
tgaagatggtggatcttctgattcaaattgcaaattgtttatacaagaaattgtagagaaaagttcataa |
130 |
Q |
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| T |
46657195 |
tgaagatggtggatcttctgattcaaattgcaaattgtttatacaagaaattgtagagcaaagctcataa |
46657264 |
T |
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