View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6244_low_18 (Length: 227)

Name: NF6244_low_18
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6244_low_18
NF6244_low_18
[»] chr4 (11 HSPs)
chr4 (18-101)||(3920994-3921077)
chr4 (18-101)||(3934215-3934298)
chr4 (116-219)||(3934467-3934570)
chr4 (116-227)||(3921244-3921356)
chr4 (7-90)||(4217412-4217500)
chr4 (20-97)||(3985774-3985856)
chr4 (9-93)||(3816387-3816476)
chr4 (9-60)||(4001122-4001173)
chr4 (9-93)||(3808811-3808900)
chr4 (18-97)||(3956728-3956812)
chr4 (9-55)||(4024021-4024067)
[»] chr5 (1 HSPs)
chr5 (20-97)||(13396748-13396830)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 3920994 - 3921077
Alignment:
Q  18 tggaaaagctttgttgtggagtacaggtaattgaatatgtgtctattaaatttatcttaattcaatgaattataaattaagctt 101  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920994 tggaaaagctatggtgtggagtacaggtaattgaatatgtgtctattaaatttatcttaattcaatgaattataaattaagctt 3921077  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 3934215 - 3934298
Alignment:
Q  18 tggaaaagctttgttgtggagtacaggtaattgaatatgtgtctattaaatttatcttaattcaatgaattataaattaagctt 101  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3934215 tggaaaagctatggtgtggagtacaggtaattgaatatgtgtctattaaatttatcttaattcaatgaattataaattaagctt 3934298  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 3934467 - 3934570
Alignment:
Q  116 taagtctataaattaattagtcgatcttatatttgatcgcactaannnnnnnnnggtagcagaatctagttaatttaaaggaagttacaatcaattttgc 215  Q
    ||||||| ||||||||||||| |||||||||||||||||||| ||         ||||||||||||||||||||||||||||||||||||||| ||| ||    
T  3934467 taagtctgtaaattaattagttgatcttatatttgatcgcaccaatttttttttggtagcagaatctagttaatttaaaggaagttacaatcagtttagc 3934566  T
Q  216 aagc 219  Q
    ||||    
T  3934567 aagc 3934570  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 3921244 - 3921356
Alignment:
Q  116 taagtctataaattaattagtcgatcttatatttgatcgcactaannnnnnnnn-ggtagcagaatctagttaatttaaaggaagttacaatcaattttg 214  Q
    |||||||||||||||||| || ||||||||| |||||||||| ||          ||||||||||||||||||||||||||||||||||||||| || ||    
T  3921244 taagtctataaattaatttgttgatcttatacttgatcgcaccaattttttttttggtagcagaatctagttaatttaaaggaagttacaatcatttgtg 3921343  T
Q  215 caagcttcctgaa 227  Q
    |||||||||||||    
T  3921344 caagcttcctgaa 3921356  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 4217500 - 4217412
Alignment:
Q  7 ttatagtcaagtggaaaagctttgttgtggagtacaggtaattgaatatgtgtct-----attaaatttatcttaattcaatgaattat 90  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||     || |||||||||||||||||| |||||||    
T  4217500 ttatagtaaagtggaaaagctttggtgtggagtacaggtaattgaatatgtgtctttcagatgaaatttatcttaattcaaggaattat 4217412  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 3985856 - 3985774
Alignment:
Q  20 gaaaagctttgttgtggagtacaggtaattgaatatgtgtct-----attaaatttatcttaattcaatgaattataaattaa 97  Q
    ||||||||||| ||||||||||||||||||||||||||||||     ||||||||||||  ||||||| ||||||||||||||    
T  3985856 gaaaagctttggtgtggagtacaggtaattgaatatgtgtctatcagattaaatttatcaaaattcaaggaattataaattaa 3985774  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 3816476 - 3816387
Alignment:
Q  9 atagtcaagtggaaaagctttgttgtggagtacaggtaattgaatatgtgtct-----attaaatttatcttaattcaatgaattataaa 93  Q
    |||||| ||||||||||||||| |||||||| |||||||||| |||| | |||     ||||||||||||||||||||| ||||||||||    
T  3816476 atagtctagtggaaaagctttggtgtggagtgcaggtaattggatatttatcttccaaattaaatttatcttaattcaaggaattataaa 3816387  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 4001173 - 4001122
Alignment:
Q  9 atagtcaagtggaaaagctttgttgtggagtacaggtaattgaatatgtgtc 60  Q
    |||||| ||||||||| ||||| |||||||| ||||||||||||||||||||    
T  4001173 atagtcgagtggaaaatctttggtgtggagtgcaggtaattgaatatgtgtc 4001122  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 3808900 - 3808811
Alignment:
Q  9 atagtcaagtggaaaagctttgttgtggagtacaggtaattgaatatgtgtct-----attaaatttatcttaattcaatgaattataaa 93  Q
    ||||| || |||||||||||||  ||||||| |||||||||| ||| ||||||     ||||||||||||||||||||  ||||||||||    
T  3808900 atagtaaaatggaaaagctttggcgtggagtgcaggtaattggatacgtgtcttccaaattaaatttatcttaattcagggaattataaa 3808811  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 3956728 - 3956812
Alignment:
Q  18 tggaaaagctttgttgtggagtacaggtaattgaatatgtgtct-----attaaatttatcttaattcaatgaattataaattaa 97  Q
    ||||||| ||||| |||||||| ||| |||||||||| ||||||     |||||||||| ||||| |||| ||||||||||||||    
T  3956728 tggaaaaactttggtgtggagtgcagataattgaatacgtgtcttctagattaaatttaccttaaatcaaagaattataaattaa 3956812  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 4024067 - 4024021
Alignment:
Q  9 atagtcaagtggaaaagctttgttgtggagtacaggtaattgaatat 55  Q
    |||||| ||||||||||||||| |||||||| ||||||| |||||||    
T  4024067 atagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatat 4024021  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 13396830 - 13396748
Alignment:
Q  20 gaaaagctttgttgtggagtacaggtaattgaatatgtgtct-----attaaatttatcttaattcaatgaattataaattaa 97  Q
    ||||||||||| ||||||||||||||||||||||| ||||||     ||||||||||||||||||||| ||||||||||||||    
T  13396830 gaaaagctttggtgtggagtacaggtaattgaatacgtgtctttcagattaaatttatcttaattcaaggaattataaattaa 13396748  T

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