View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6244_low_4 (Length: 458)
Name: NF6244_low_4
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6244_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 4749629 - 4750070
Alignment:
| Q |
1 |
aacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattaggcaaa |
100 |
Q |
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| T |
4749629 |
aacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggacttacacatacggaaattaggcaaa |
4749728 |
T |
|
| Q |
101 |
tgaaatatctttcacaggtatgcgataggtgaattctttcttatcatattaatgattccggtcataagtagaaagtttggccaacaaaagttgatatatt |
200 |
Q |
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| T |
4749729 |
tgaaatatctttctcaggtatgcgataggtgaattctttcttatcatattaatgattccggtcataagtagaaagtttggtcaacaaaatttgatatatt |
4749828 |
T |
|
| Q |
201 |
tagttgattaaatacatcaaattttgttgatccaaatttctcttatatttaagaccgaagaagtattattattttaacaaagtatttttgcctgaattaa |
300 |
Q |
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| T |
4749829 |
tagttgattaaatacattaaattttgttgattcaaatttctcgtatatttaagatcgaagaagtactattattttaacaaagtatttttgcctgaattaa |
4749928 |
T |
|
| Q |
301 |
aaataaccatctttcaactaagttgcatggttatttccaaaatgaaaattatgattttaacatgatatattctacactatagattattgggttatttcca |
400 |
Q |
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| T |
4749929 |
aaataaccatctttcaactaagttgcatggttatttctaaaatgaaaattatgattttaacatgatatattctacactatagattattggcttatttcca |
4750028 |
T |
|
| Q |
401 |
aaataaaacgtatgttttgatatgatatattctacattatag |
442 |
Q |
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| T |
4750029 |
aaataaaaagtatgttttgatatgatatattctacattatag |
4750070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 4758195 - 4758324
Alignment:
| Q |
21 |
ctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattaggcaaatgaaatatctttcacaggta |
120 |
Q |
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|||||||||||||||||||||||| |||| || |||||||||| |||||||||| | | | || |||||||| ||||||| ||||||||||| ||||| |
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| T |
4758195 |
ctttcagaaagaacaagaagagatcatggaaacaaggccttccactcaaaaaggactgaaccttaaggaaattaagcaaatgcaatatctttcaaaggta |
4758294 |
T |
|
| Q |
121 |
tgcgataggtgaattctttcttatcatatt |
150 |
Q |
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| T |
4758295 |
tgtgaaatgtgaattctttcttgtcatatt |
4758324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 21576017 - 21576057
Alignment:
| Q |
207 |
attaaatacatcaaattttgttgatccaaatttctcttata |
247 |
Q |
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|||| ||||||||| ||||||||||||||| |||||||||| |
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| T |
21576017 |
attagatacatcaacttttgttgatccaaaattctcttata |
21576057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 247
Target Start/End: Original strand, 17344289 - 17344324
Alignment:
| Q |
212 |
atacatcaaattttgttgatccaaatttctcttata |
247 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
17344289 |
atacatcaacttttgttgatccaaatttctcttata |
17344324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 41615733 - 41615695
Alignment:
| Q |
209 |
taaatacatcaaattttgttgatccaaatttctcttata |
247 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
41615733 |
taaatacatcaacttttgttgatccaattttctcttata |
41615695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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