View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6244_low_8 (Length: 364)
Name: NF6244_low_8
Description: NF6244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6244_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 26132638 - 26132798
Alignment:
| Q |
31 |
ttcttaatcttccaatgagtatcaagtggcttcttttacctctgattcctttccttccaatcaactctattgtactgttatgctcatatccttcctgcaa |
130 |
Q |
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| T |
26132638 |
ttcttaatcttccaatgagtatcaagtggcttcttttatctctgattcctttccttccaatcaactctgttgtactgttatgctcatatccttcctgcaa |
26132737 |
T |
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| Q |
131 |
atgtaggttttgagatttactaataaataaatcctcttatttttaatttttatattcatgg |
191 |
Q |
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| T |
26132738 |
atgtaggttttgagatttactaataaataaatcctcttatttttaatttttatattcatgg |
26132798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 246 - 343
Target Start/End: Original strand, 26132853 - 26132950
Alignment:
| Q |
246 |
ccggctttgcctactatatacatcacattcaacaaactcacagttagcgtcctacgaacaacaatgtaagactcaatcttatggaaataaatccaaca |
343 |
Q |
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| T |
26132853 |
ccggctttgcctactatatacatcacattcaacaaactcacagttagcgtcctacgaacaacaatgtaagactcaatcttatggaaataaatccaaca |
26132950 |
T |
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