View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6245_low_1 (Length: 709)

Name: NF6245_low_1
Description: NF6245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6245_low_1
NF6245_low_1
[»] chr2 (40 HSPs)
chr2 (83-691)||(8574137-8574746)
chr2 (299-691)||(9068719-9069119)
chr2 (299-666)||(9315189-9315557)
chr2 (296-691)||(9291075-9291467)
chr2 (299-592)||(9318667-9318973)
chr2 (327-593)||(10370971-10371241)
chr2 (83-299)||(9069183-9069397)
chr2 (299-691)||(9326531-9326912)
chr2 (327-577)||(10334869-10335120)
chr2 (327-620)||(10346844-10347142)
chr2 (291-620)||(10351276-10351595)
chr2 (481-691)||(9061851-9062066)
chr2 (495-661)||(9273899-9274064)
chr2 (86-299)||(9076780-9076987)
chr2 (301-468)||(9076551-9076719)
chr2 (299-532)||(9285022-9285251)
chr2 (299-442)||(9287709-9287858)
chr2 (291-407)||(10340557-10340672)
chr2 (299-466)||(9273173-9273344)
chr2 (560-691)||(7116688-7116819)
chr2 (113-299)||(9290810-9290985)
chr2 (337-468)||(11425279-11425414)
chr2 (302-456)||(9271827-9271990)
chr2 (299-373)||(7117004-7117078)
chr2 (88-299)||(9314894-9315095)
chr2 (527-681)||(10340778-10340934)
chr2 (537-590)||(9287941-9287994)
chr2 (495-587)||(9295433-9295525)
chr2 (1-39)||(8574790-8574828)
chr2 (173-246)||(9062382-9062456)
chr2 (635-691)||(10335165-10335222)
chr2 (481-521)||(7116882-7116922)
chr2 (372-415)||(9062139-9062182)
chr2 (420-466)||(7116943-7116989)
chr2 (557-607)||(8580365-8580415)
chr2 (258-299)||(9297498-9297540)
chr2 (481-519)||(11425224-11425262)
chr2 (420-466)||(12019789-12019835)
chr2 (635-671)||(10347170-10347206)
chr2 (482-522)||(12019732-12019772)
[»] chr8 (1 HSPs)
chr8 (359-686)||(41968072-41968408)
[»] scaffold0667 (1 HSPs)
scaffold0667 (300-683)||(1674-2058)
[»] chr3 (1 HSPs)
chr3 (301-593)||(37461517-37461818)
[»] chr4 (1 HSPs)
chr4 (345-620)||(26574122-26574397)
[»] chr1 (3 HSPs)
chr1 (481-618)||(29462062-29462198)
chr1 (301-386)||(29462264-29462349)
chr1 (482-522)||(29444187-29444227)
[»] chr6 (1 HSPs)
chr6 (356-404)||(10856058-10856106)


Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 83 - 691
Target Start/End: Complemental strand, 8574746 - 8574137
Alignment:
Q  83 cgcgcacgaaatgagcaatactctttgtacaatatccaaccactttgtgctttcttaagcatgttgtaagagattggaatttaaaaataataatggaaat 182  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8574746 cgcgcacgaaatgagcaatactcttcgtacaatatccaaccactttgtgctttcttaagcatgttgtaagagattggaatttaaaaataataatggaaat 8574647  T
Q  183 aaaagattcttttcatacactaaccaacctcattgtgcttccatattttttcaacagtactagagtctagaagtaaaagacaaaagcagaagatccttta 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8574646 aaaagattcttttcatacactaaccaacctcattgtgcttccatattttttcaacagtactagagtctagaagtaaaagacaaaagcagaagatccttta 8574547  T
Q  283 gaaaggccagagggagaaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttga 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8574546 gaaaggccagagggagaaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttga 8574447  T
Q  383 gcatcctgtttcagctgcacatcacaggtcctttaaccccttacaatctcaatttaaatctttaggacaagaagccatccctgtgg-nnnnnnnnnntta 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           | |    
T  8574446 gcatcctgtttcagctgcacatcacaggtcctttaaccccttacaatctcaatttaaatctttaggacaagaagccatccctgtggaaaaaaaaaaatga 8574347  T
Q  482 atctcatcgaagtaagttcaacaatatcacaaaagaatagttgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggta 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8574346 atctcatcgaagtaagttcaacaatatcacaaaagaatagttgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggta 8574247  T
Q  582 ggccaatttctatataacaattttctcctctttacataccatggcatggcggtatagtctcaacattcataaattagcttgtcaaaataattattcagga 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8574246 ggccaatttctatataacaattttctcctctttacataccatggcatggtggtatagtctcaacattcataaattagcttgtcaaaataattattcagga 8574147  T
Q  682 gtgaagatct 691  Q
    ||||||||||    
T  8574146 gtgaagatct 8574137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 299 - 691
Target Start/End: Complemental strand, 9069119 - 9068719
Alignment:
Q  299 aaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagct 398  Q
    |||||||||||||||| ||||| || | |||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||| |    
T  9069119 aaaaatgggtgcagcttcattctttatcaattcaacctttcccacaaaccaaggtgactaattacatcacaagaagcaacttgagcatcatgtttcagtt 9069020  T
Q  399 g-cacatcacaggtcctttaaccccttacaatctcaatttaaatctttaggacaagaagccatccctgtg------------gnnnnnnnnnnttaatct 485  Q
    | ||||||||||||||||  | ||||||||||||||||||||||| || ||||||||| |||||||||||            |          | |||||    
T  9069019 ggcacatcacaggtccttccatcccttacaatctcaatttaaatcctttggacaagaaaccatccctgtggaaagaaagaaagaaaaaaaaaatgaatct 9068920  T
Q  486 catcgaagtaagttcaacaatatcacaaaagaatagttgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggtaggcc 585  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || | |||||||| |||| |||||||  |||| ||||||||||||||||||||    
T  9068919 catcgaagtaagttcaacaatttcacaaaagaatagttgataaaaagccatacttttgaaaggaattatgcat--atttggagtaatttcatggtaggcc 9068822  T
Q  586 aatttctatataacaattttctcctctttacataccatggcatggcggtatagtctcaacattcataaattagcttgtcaaaataattattcaggagtga 685  Q
    ||||||||   ||||| ||||| |||||||||||||| |||| ||  | |||| ||||||||||| |||| |||||||||| ||||||||| ||||| ||    
T  9068821 aatttcta---aacaactttcttctctttacataccacggcagggaagaataggctcaacattcagaaataagcttgtcaagataattatttaggagcga 9068725  T
Q  686 agatct 691  Q
    ||||||    
T  9068724 agatct 9068719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 299 - 666
Target Start/End: Original strand, 9315189 - 9315557
Alignment:
Q  299 aaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagct 398  Q
    ||||||| ||||||||||||||||| | ||||||||| || ||||||||||||  |||||||||||||||||||||||| ||||||||| ||||||||||    
T  9315189 aaaaatgagtgcagctccattcattatcaattcaaccattcccacaaaccaagcagactaattccatcacaagaaacaagttgagcatcatgtttcagct 9315288  T
Q  399 g---cacatcacaggtcctttaaccccttacaatctcaatttaaatctttaggacaagaagccatccctg-tggnnnnnnnnnnttaatctcatcgaagt 494  Q
    |   |||||||||||||| |  | ||||||||||||||||||||||| |  |||||||||| | |||||| |||          | |||||||||    |    
T  9315289 gctacacatcacaggtccctccatcccttacaatctcaatttaaatcctcgggacaagaagtcgtccctgttggaaaaaaaaaatgaatctcatc----t 9315384  T
Q  495 aagttcaacaatatcacaaaagaatagttgat--aaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaatttct 592  Q
    ||||| |||||||||||||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||  |||||| | || ||||||||||||||    
T  9315385 aagttaaacaatatcacaaaagaataattgataaaaaaaaccatgcttttgaatggaactatgaataaatttgtagtaatat-atagtaggccaatttct 9315483  T
Q  593 atataacaattttctcctctttacataccatggcatggcggtatagtctcaacattcataaattagcttgtcaa 666  Q
    | ||||||||||||||| ||||||||||||  ||| || || |||||||||||||||| |||| |||| |||||    
T  9315484 aaataacaattttctccactttacataccacagcagggtggaatagtctcaacattcaaaaataagctggtcaa 9315557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 296 - 691
Target Start/End: Original strand, 9291075 - 9291467
Alignment:
Q  296 gagaaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaactt--gagcatcctgttt 393  Q
    ||||||||||| ||||||||| |||| | | |||||||||||  |||||||||||||| |||||||||||||||| |||||||||  ||| |||||||||    
T  9291075 gagaaaaatggatgcagctcctttcaatatcaattcaaccttccccacaaaccaaggtaactaattccatcacaacaaacaacttttgagaatcctgttt 9291174  T
Q  394 cagctgcacatcacaggtccttta----accccttacaatctcaatttaaatctttaggacaagaagccatccctgtggnnnnnnnnnnttaatctcatc 489  Q
    ||||||||||||||||| ||||      | ||||||||||||||||||||||| |  |||||||||| | |||||||||            |||||||||    
T  9291175 cagctgcacatcacaggcccttacttccatcccttacaatctcaatttaaatcctcgggacaagaagtcctccctgtggaaaaaaaaaag-aatctcatc 9291273  T
Q  490 gaagtaagttcaacaatatcacaaaagaatagttgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaatt 589  Q
        |||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||  |||||| | |||| |||||||||    
T  9291274 ----taagttcaacaatatcgcaaaagaatagttgataaaaaaccatgcttttgaatgtaactatgcataaatttgaagtaatat-atggcaggccaatt 9291368  T
Q  590 tctatataacaattttctcctctttacataccatggcatggcggtatagtctcaacattcataaattagcttgtcaaaataattattcaggagtgaagat 689  Q
    |||||| || |||||||||| |   ||| ||||  |||  | || |||||||||||||||| |||| |||| | ||||||||||||| | ||||||||||    
T  9291369 tctataaaataattttctccac---acacaccaaagcagtgtggaatagtctcaacattcagaaataagctggacaaaataattatttatgagtgaagat 9291465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 299 - 592
Target Start/End: Original strand, 9318667 - 9318973
Alignment:
Q  299 aaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttca--- 395  Q
    ||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||       
T  9318667 aaaaatgggtgcagctccattcattatcaattcagcctttcccacaaaccaaggtttctaattccatcacaagaaacaacttgagtatcctgtttcagct 9318766  T
Q  396 gctgcacatcacagg----tcctttaaccccttacaatctcaatttaaatctttaggacaagaagccatccctgtgg--nnnnnnnnnnttaatctcatc 489  Q
    |||||||||||||||    |||||  | ||||||||||||||||||||||| |  |||||||||| | |||||||||            | |||||||||    
T  9318767 gctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatcctcgggacaagaagtcgtccctgtggaagaaaaaaaaatgaatctcatc 9318866  T
Q  490 gaagtaagttcaacaatatcacaaaagaatagttgataaaaaaccgtgc-ttttgaatggaactatgcataaatttagag---taatttcatggtaggcc 585  Q
     ||| ||||||||||||||||||||| |||||||||||||||||| ||| |||| || ||||||| ||||||  ||||||   |||||||||||||||||    
T  9318867 aaagcaagttcaacaatatcacaaaataatagttgataaaaaaccatgctttttaaaaggaactaagcataagcttagagtaataatttcatggtaggcc 9318966  T
Q  586 aatttct 592  Q
    |||||||    
T  9318967 aatttct 9318973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 327 - 593
Target Start/End: Original strand, 10370971 - 10371241
Alignment:
Q  327 aattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggt----cctttaacccc 422  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||    ||||  | |||    
T  10370971 aattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatccc 10371070  T
Q  423 ttacaatctcaatttaaatctttaggacaagaagccatccctgtggnnnnnnnnnntt-aatctcatcgaagtaagttcaacaatatcacaaaagaatag 521  Q
    ||||| |||||||||||||| |  |||||| ||| | |||||||||           | ||||||||| |||||| ||||| || |||||||||||||||    
T  10371071 ttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaaaaaaaaatgaatctcatcaaagtaacttcaaaaacatcacaaaagaatag 10371170  T
Q  522 ttgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaatttcta 593  Q
     ||||||||| || |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  10371171 atgataaaaa-ccatgcttttgaaaggaactatgcataaatttggagtaatttcatggtaggccaatttcta 10371241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 83 - 299
Target Start/End: Complemental strand, 9069397 - 9069183
Alignment:
Q  83 cgcgcacgaaatgagcaatactctttgtacaatatccaaccactttgtgctttcttaagcatgttgtaagagattggaatttaaaaataataatggaaat 182  Q
    |||||| |||| |||||||||| ||  |||| || |||||| |  ||||||||| | ||||||||||||||| || ||||||||| |||||   ||||||    
T  9069397 cgcgcaagaaaggagcaatacttttcatacagtaaccaacctcaatgtgctttcattagcatgttgtaagagtttagaatttaaagataat---ggaaat 9069301  T
Q  183 aaaagattcttttcatacactaaccaacctcattgtgcttccatattttttcaacagtactagagtctagaagtaaaagacaaaagcagaagatcc-ttt 281  Q
    ||||||| | ||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9069300 aaaagatacgttttatacaataaccaacctcattgtgctttcatattttctcaacagtactagagtctagaagtaaaagacaaaagcagaagatccattt 9069201  T
Q  282 agaaaggccagagggaga 299  Q
    ||||||||||||||||||    
T  9069200 agaaaggccagagggaga 9069183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 299 - 691
Target Start/End: Original strand, 9326531 - 9326912
Alignment:
Q  299 aaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttca--- 395  Q
    ||||||| ||||||||||||||||| |  ||||||||| |  |||||||||||  |||||||||||||||||||||||||||||| ||||||| |||       
T  9326531 aaaaatgagtgcagctccattcattatccattcaacctatcgcacaaaccaagcagactaattccatcacaagaaacaacttgagtatcctgtatcagct 9326630  T
Q  396 gctgcacatcacagg----tcctttaaccccttacaatctcaatttaaatctttaggacaagaagccatccctgtggnnnnnnnnnnttaatctcatcga 491  Q
    |||||||||||||||    |||||  | ||||||||| ||||||||||||| |  |||||||||| | |||||||||          | |||||||||||    
T  9326631 gctgcacatcacaggtccttccttctatcccttacaacctcaatttaaatcctcgggacaagaagtcgtccctgtggaaagaaaaactgaatctcatcga 9326730  T
Q  492 agtaagttcaacaatatcacaaaagaatagttgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaatttc 591  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||              || || ||||||||||||| |||||||||||||    
T  9326731 agtaagttcaacaatatcacaaaagaatagttgat-aaaaaccatgcttttga--------------aacttaagagtaatttcatagtaggccaatttc 9326815  T
Q  592 tatataacaattttctcctctttacataccatggcatggcggtatagtctcaacattcataaattagcttgtcaaaataattattcaggagtgaagatct 691  Q
    |    ||||| ||||| |||||||||||||| ||||  | || |||||||||||||||| |||| || | || |||| ||||||| ||||||||| ||||    
T  9326816 t---caacaactttcttctctttacataccacggcagtgtggaatagtctcaacattcagaaataagttggtaaaaaaaattatttaggagtgaaaatct 9326912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 327 - 577
Target Start/End: Original strand, 10334869 - 10335120
Alignment:
Q  327 aattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacagg----tcctttaacccc 422  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |    |||||  | |||    
T  10334869 aattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatccc 10334968  T
Q  423 ttacaatctcaatttaaatctttaggacaagaagccatccctgtggnnnnnnnnnnttaatctcatcgaagtaagttcaacaatatcacaaaagaatagt 522  Q
    ||||| |||||||||||||| |  |||||||||| |||||||||||          | ||||||||  |||||||||||||||||||||||||||||  |    
T  10334969 ttacagtctcaatttaaatcctcgggacaagaagtcatccctgtgg---agaaaaatgaatctcataaaagtaagttcaacaatatcacaaaagaatgtt 10335065  T
Q  523 tgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcat 577  Q
     ||||||||||| || ||||||| ||||||||| | |||||| ||||||||||||    
T  10335066 cgataaaaaaccatgtttttgaaaggaactatgtacaaatttggagtaatttcat 10335120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 327 - 620
Target Start/End: Original strand, 10346844 - 10347142
Alignment:
Q  327 aattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggtcctt--ta--acccc 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  | || || |||||||||||||| ||||||||||||  ||  | |||    
T  10346844 aattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaaccggtgcttcatgtttcagctgcacttcacaggtccttcctaccatccc 10346943  T
Q  423 ttacaatctcaatttaaatctttaggacaagaagccatccctgtggnnnnnnnnnnttaatctcatcgaagtaagttcaacaatatcacaaaagaatagt 522  Q
    |||||||||||||||||||| |  |||||||||| |||||||||||          || ||||||||  ||||||||||||||||| |||||||||| ||    
T  10346944 ttacaatctcaatttaaatcctcgggacaagaagtcatccctgtgg---gaaaaaattcatctcatcatagtaagttcaacaatatgacaaaagaattgt 10347040  T
Q  523 tgat-----aaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaatttctatataacaattttctcctctttaca 617  Q
    | ||     |||||||| || ||||||| |||||||||||||||||| ||||||||||   ||| ||||||||||| | ||||| ||||  |||||||||    
T  10347041 tcataaaaaaaaaaaccatgtttttgaaaggaactatgcataaatttggagtaatttcccagta-gccaatttctaaacaacaactttcctctctttaca 10347139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 291 - 620
Target Start/End: Original strand, 10351276 - 10351595
Alignment:
Q  291 agagggagaaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctg 390  Q
    ||||||| ||||||||||||| |||||| |||| | |||||||||||| | ||||||||||||||  |||||||||||||||||||||   ||||||||     
T  10351276 agagggataaaaatgggtgcaactccat-cattatcaattcaacctttcctacaaaccaaggtgagcaattccatcacaagaaacaacagaagcatccta 10351374  T
Q  391 tttcagctgcacatcacaggtcctttaaccccttacaatctcaatttaaatctttaggacaagaagccatccctgtggnnnnnnnnnnttaatctcatcg 490  Q
    |||||||||||| |||| |||||||    ||||||||||||||||||||||| |   ||||||||| | |||||||||          | |||| ||       
T  10351375 tttcagctgcacttcactggtccttccttcccttacaatctcaatttaaatcctccagacaagaagtcgtccctgtgg----aaaaaatgaatcaca--- 10351467  T
Q  491 aagtaagttcaacaatatcacaaaagaatagttgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaattt 590  Q
    ||| |||||||| ||||||||||||||||||||||| ||||| | |||||||||| |||||||||||||||||| ||||| ||||||||||||||||  |    
T  10351468 aag-aagttcaaaaatatcacaaaagaatagttgat-aaaaatcatgcttttgaaaggaactatgcataaatttggagtactttcatggtaggccaaaat 10351565  T
Q  591 ctatataacaattttctcctctttacatac 620  Q
    ||| | ||||| ||||  ||||||||||||    
T  10351566 ctaaacaacaactttcctctctttacatac 10351595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 481 - 691
Target Start/End: Complemental strand, 9062066 - 9061851
Alignment:
Q  481 aatctcatcgaagtaagttcaacaatat-----cacaaaagaatagttgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttc 575  Q
    ||||||||| ||||||||||||||||||     ||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||||||||    
T  9062066 aatctcatcaaagtaagttcaacaatattatatcacaaaagaatagttgataaaaacccatgcttttgaatgaaactatgcataaatttggagtaatttc 9061967  T
Q  576 atggtaggccaatttctatataacaattttctcctctttacataccatggcatggcggtatagtctcaacattcataaattagcttgtcaaaataattat 675  Q
    ||||||||| |||||| | |||||||||| || | ||||||||||||  ||| || || |||||||| ||||||| |||| || | | ||||||||||||    
T  9061966 atggtaggctaatttccaaataacaatttactacactttacataccacagcagggtggaatagtctccacattcagaaataagttggccaaaataattat 9061867  T
Q  676 tcaggagtgaagatct 691  Q
    | ||||||||| ||||    
T  9061866 ttaggagtgaaaatct 9061851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 495 - 661
Target Start/End: Original strand, 9273899 - 9274064
Alignment:
Q  495 aagttcaacaatatcacaaaagaatagttgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaatttctat 594  Q
    ||||||||||||||||||||| |||||||||||||||||  |||||||||| |||||||||| |||||||| | ||||||||| |||||||||||||||     
T  9273899 aagttcaacaatatcacaaaaaaatagttgataaaaaaca-tgcttttgaaaggaactatgcttaaatttaaaataatttcattgtaggccaatttctaa 9273997  T
Q  595 ataacaattttctcctctttacataccatggcatggcggtatagtctcaacattcataaattagctt 661  Q
    ||||||||||||||||||| |||||||| | || || || ||||||| |||||||| |||| |||||    
T  9273998 ataacaattttctcctcttcacataccacgacagggtggaatagtcttaacattcagaaataagctt 9274064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 86 - 299
Target Start/End: Complemental strand, 9076987 - 9076780
Alignment:
Q  86 gcacgaaatgagcaatactctttgtacaatatccaaccactttgtgctttcttaagcatgttgtaagagattggaatttaaaaataataatggaaataaa 185  Q
    |||||||| |||||||||| ||  ||| ||| |||||| | |||||||||| |||||||| |||    | |||||||||| | |||||    ||||||||    
T  9076987 gcacgaaaggagcaatacttttcatactataaccaacctcattgtgctttcataagcatgctgt----gtttggaatttagagataatc---gaaataaa 9076895  T
Q  186 agattcttttcatacactaaccaacctcattgtgcttccatattttttcaacagtactagagtctagaagtaaaagacaaaagcagaagatcc-tttaga 284  Q
    |||| ||||| ||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  9076894 agatactttttatacaataatcatcctcattgtgcttccatattttctcaacagtactagagtctagaagtaaaagataaaggcagaagatccttttaga 9076795  T
Q  285 aaggccagagggaga 299  Q
    |||||||||||||||    
T  9076794 aaggccagagggaga 9076780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 301 - 468
Target Start/End: Complemental strand, 9076719 - 9076551
Alignment:
Q  301 aaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcc-tgtttcagctg 399  Q
    |||||||||||| |||||||||| | |||||||||||| |  ||||||||||||||||||| ||||| |||||||||||  ||||||| | |||||||||    
T  9076719 aaatgggtgcagttccattcattatcaattcaacctttcctgcaaaccaaggtgactaattacatca-aagaaacaactctagcatccatctttcagctg 9076621  T
Q  400 -cacatcacaggtcctttaaccccttacaatctcaatttaaatctttaggacaagaagccatccctgtgg 468  Q
     ||||||||||||||||  | ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  9076620 acacatcacaggtccttccatcccttacaatctcaatttaaatcctttggacaagaagccatccctgtgg 9076551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 299 - 532
Target Start/End: Complemental strand, 9285251 - 9285022
Alignment:
Q  299 aaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagct 398  Q
    ||||||| ||||||||||||  ||| | |||||||| ||| ||||||     | ||||||||||||||||||||||| ||||||||||| ||||||||||    
T  9285251 aaaaatgtgtgcagctccatgaattatcaattcaacatttcccacaa-----gatgactaattccatcacaagaaactacttgagcatcatgtttcagct 9285157  T
Q  399 gcacatcacaggt----cctttaaccccttacaatctcaatttaaatctttaggacaagaagccatccctgtggnnnnnnnnnnttaatctcatcgaagt 494  Q
    |||||||||||||    ||||  | ||||||||||||||||||||||| |  |||||||||| | ||||||||           |  |||||||| ||||    
T  9285156 gcacatcacaggtccttccttccatcccttacaatctcaatttaaatcctccggacaagaagtcgtccctgtg---agaaaaaatgcatctcatcaaagt 9285060  T
Q  495 aagttcaacaatatcacaaaagaatagttgataaaaaa 532  Q
    |||||||||||||| |||||||||||||||||||||||    
T  9285059 aagttcaacaatattacaaaagaatagttgataaaaaa 9285022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 299 - 442
Target Start/End: Original strand, 9287709 - 9287858
Alignment:
Q  299 aaaaatgggtgcagctccat--tcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcag 396  Q
    ||||||||||||| || |||  ||||| | |||||| ||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9287709 aaaaatgggtgcaactacatattcattatcaattcagcctttcccacaagacaaggtgactaactccatcacaagaaacaacttgagcatcctgtttcag 9287808  T
Q  397 ctgcacatcacagg----tcctttaaccccttacaatctcaatttaaatc 442  Q
    ||||||||||||||    ||| |  | |||||||||||||||||||||||    
T  9287809 ctgcacatcacaggtacttccatccatcccttacaatctcaatttaaatc 9287858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 291 - 407
Target Start/End: Original strand, 10340557 - 10340672
Alignment:
Q  291 agagggagaaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctg 390  Q
    ||||||| ||||||||||||| |||||| |||| | |||||||||||| ||||| ||| |||||||||||||||||| ||||||||||| ||||||||||    
T  10340557 agagggataaaaatgggtgcaactccat-cattatcaattcaacctttaccacataccgaggtgactaattccatcataagaaacaactggagcatcctg 10340655  T
Q  391 tttcagctgcacatcac 407  Q
    |||||||||||| ||||    
T  10340656 tttcagctgcacttcac 10340672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 299 - 466
Target Start/End: Original strand, 9273173 - 9273344
Alignment:
Q  299 aaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagct 398  Q
    |||||||| |||||||||||||||| | ||||||||||||  | |||||||||| |||||||||||| ||||||| ||||||||||||| ||||  ||||    
T  9273173 aaaaatggatgcagctccattcattatcaattcaacctttctcgcaaaccaaggagactaattccataacaagaagcaacttgagcatcgtgttaaagct 9273272  T
Q  399 gcacatcacagg----tcctttaaccccttacaatctcaatttaaatctttaggacaagaagccatccctgt 466  Q
    ||| ||||||||    |||||  | |||| |||||||||||||||||| |  |||||||||| | |||||||    
T  9273273 gcatatcacaggtccttccttccatccctcacaatctcaatttaaatcctcgggacaagaagtcgtccctgt 9273344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 560 - 691
Target Start/End: Complemental strand, 7116819 - 7116688
Alignment:
Q  560 aatttagagtaatttcatggtaggccaatttctatataacaattttctcctctttacataccatggcatggcggtatagtctcaacattcataaattagc 659  Q
    |||| ||||||||||||||||||||||||||||  | ||||  ||||| | |||||||||||| |||| || |  |||||||||||||||| |||| |||    
T  7116819 aattgagagtaatttcatggtaggccaatttctcaacaacagctttcttcactttacataccacggcagggtgaaatagtctcaacattcagaaatgagc 7116720  T
Q  660 ttgtcaaaataattattcaggagtgaagatct 691  Q
    ||| ||||||||||||| ||||||||||||||    
T  7116719 ttgccaaaataattatttaggagtgaagatct 7116688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 113 - 299
Target Start/End: Original strand, 9290810 - 9290985
Alignment:
Q  113 aatatccaaccactttgtgctttcttaagcatgttgtaagagattggaatttaaaaataataatggaaataaaagattcttttcatacactaaccaacct 212  Q
    |||| |||||| | ||||||| || | ||||||||||||||| || ||||||| | |||     ||||||||||||| ||||||||||| ||||||||||    
T  9290810 aataaccaaccgcgttgtgctgtcatcagcatgttgtaagagtttagaatttagagatacc---ggaaataaaagatacttttcatacaataaccaacct 9290906  T
Q  213 cattgtgcttccatattttttcaacagtactagagtctagaagtaaaagacaaaagcagaagatcctttagaaaggccagagggaga 299  Q
    ||||||||||||||||||  |||||||||       |||||||||||||||||||||||||| || |||||| ||| ||||||||||    
T  9290907 cattgtgcttccatatttcctcaacagta-------ctagaagtaaaagacaaaagcagaag-tcttttagataggtcagagggaga 9290985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 337 - 468
Target Start/End: Complemental strand, 11425414 - 11425279
Alignment:
Q  337 tttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacagg----tcctttaaccccttacaatctc 432  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||    |||||  | |||||||||| ||    
T  11425414 tttccccaaaccaaggtgattaattccttcacaagaaacaactcgagtatcctgtttcagctgcacatcacaggtccatccttccatcccttacaatgtc 11425315  T
Q  433 aatttaaatctttaggacaagaagccatccctgtgg 468  Q
    |||||||||| |  |||||||||| | |||||||||    
T  11425314 aatttaaatcctcgggacaagaagtcgtccctgtgg 11425279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 302 - 456
Target Start/End: Original strand, 9271827 - 9271990
Alignment:
Q  302 aatgggtgcagctccat--tcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaaga---aacaacttgagcatcctgtttcag 396  Q
    |||||||||| ||||||  ||||| | |||||||||||| ||||||||||||| |||||||||||| ||||||   ||||||||||  ||||||||||||    
T  9271827 aatgggtgcaactccatattcattatcaattcaacctttcccacaaaccaaggagactaattccattacaagaaacaacaacttgattatcctgtttcag 9271926  T
Q  397 ctgcacatcacaggtcc----tttaaccccttacaatctcaatttaaatctttaggacaagaag 456  Q
    |||||||||||| ||||    ||  | ||||||||||||||||||||||| |  ||||||||||    
T  9271927 ctgcacatcacatgtccttctttccatcccttacaatctcaatttaaatcctcgggacaagaag 9271990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 299 - 373
Target Start/End: Complemental strand, 7117078 - 7117004
Alignment:
Q  299 aaaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaa 373  Q
    |||||||||  |||||||||||||| | ||||||||| || | |||||||||| |||||||||||||||||||||    
T  7117078 aaaaatgggcacagctccattcattattaattcaaccattccaacaaaccaagatgactaattccatcacaagaa 7117004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 88 - 299
Target Start/End: Original strand, 9314894 - 9315095
Alignment:
Q  88 acgaaatgagcaatactctttgtacaatatccaaccactttgtgctttcttaagcatgttgt-aagagattggaatttaaaaataataatggaaataaaa 186  Q
    |||||| |||||||||| ||  ||||||| |||||| |  ||||||||| |||||||||| | ||||| ||  |||||| | |||||    |||||| ||    
T  9314894 acgaaaggagcaatacttttcatacaataaccaacctcaatgtgctttcataagcatgtttttaagagtttcaaatttagagataatt---gaaatagaa 9314990  T
Q  187 gattcttttcatacactaaccaacctcattgtgcttccatattttttcaacagtactagagtctagaagtaaaagacaaaagcagaagatcc-tttagaa 285  Q
     || ||||||||||| |||||||||||| |||||||||||||||| ||||| ||        |||||| ||||||||  |||||| |||||| |||||||    
T  9314991 catacttttcatacaataaccaacctcactgtgcttccatattttctcaacggt-------gctagaattaaaagac--aagcagcagatccttttagaa 9315081  T
Q  286 aggccagagggaga 299  Q
    ||||||||||||||    
T  9315082 aggccagagggaga 9315095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 681
Target Start/End: Original strand, 10340778 - 10340934
Alignment:
Q  527 aaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaatttctatataacaattttctcctctttacata----cca 622  Q
    |||| ||| ||||||||||  |||||||||||||||||  ||||| |||||||||||||||||||   | ||||| | ||| ||||||||| |    |||    
T  10340778 aaaagaccatgcttttgaaaagaactatgcataaatttgtagtaagttcatggtaggccaatttc--aacaacaaatatcttctctttacagacaagcca 10340875  T
Q  623 tggcatggcggtatagtctcaacattcataaattagcttgtcaaaataattattcagga 681  Q
    || || || |  |||||||||||||||| |||| ||||||||||||||| |||| ||||    
T  10340876 tgacagggtgtaatagtctcaacattcagaaataagcttgtcaaaataactatttagga 10340934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 590
Target Start/End: Original strand, 9287941 - 9287994
Alignment:
Q  537 gcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaattt 590  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||||||||||    
T  9287941 gcttttgcaaggaactatgcataaatttggagtaatttcatggtaggccaattt 9287994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 495 - 587
Target Start/End: Complemental strand, 9295525 - 9295433
Alignment:
Q  495 aagttcaacaatatcacaaaagaatagttgataaaaaaccgt--gcttttgaatggaactatgcataaatttagagtaatttcatggtaggccaa 587  Q
    |||||||||||||||||||  ||||||||  |||||||   |  ||||||||| |||||||||| ||||||| ||||||||||||||||||||||    
T  9295525 aagttcaacaatatcacaa--gaatagttcctaaaaaaaattacgcttttgaaaggaactatgcctaaatttggagtaatttcatggtaggccaa 9295433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8574828 - 8574790
Alignment:
Q  1 aacgtgatggaaaacacatgcagtaacgaacaaagactt 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8574828 aacgtgatggaaaacacatgcagtaacgaacaaagactt 8574790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 9062456 - 9062382
Alignment:
Q  173 taatggaaataaaagattcttttcatacactaaccaacctcattgtgc-ttccatattttttcaacagtactaga 246  Q
    ||||||||||||||||  ||||| ||||| |||||||||||||||||| |||||||| ||  |||||||||||||    
T  9062456 taatggaaataaaagacactttttatacaataaccaacctcattgtgctttccatatattcgcaacagtactaga 9062382  T

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Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 635 - 691
Target Start/End: Original strand, 10335165 - 10335222
Alignment:
Q  635 atagtctcaacattcataaattagcttgtcaaaat-aattattcaggagtgaagatct 691  Q
    |||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||    
T  10335165 atagtctcaacattcagaaataagcttgtcaaaataaattatttaggagtgaagatct 10335222  T

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Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 481 - 521
Target Start/End: Complemental strand, 7116922 - 7116882
Alignment:
Q  481 aatctcatcgaagtaagttcaacaatatcacaaaagaatag 521  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  7116922 aatctcatcgaagtaagttcaacaatgtcacaaaagaatag 7116882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 9062182 - 9062139
Alignment:
Q  372 aaacaacttgagcatcctgtttcagctgcacatcacaggtcctt 415  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  9062182 aaacaacttgagcatcttgtttcagctgcacatcataggtcctt 9062139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 466
Target Start/End: Complemental strand, 7116989 - 7116943
Alignment:
Q  420 cccttacaatctcaatttaaatctttaggacaagaagccatccctgt 466  Q
    ||||||||||||||||||||||| || |||||||||| | |||||||    
T  7116989 cccttacaatctcaatttaaatcctttggacaagaagtcctccctgt 7116943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 607
Target Start/End: Complemental strand, 8580415 - 8580365
Alignment:
Q  557 ataaatttagagtaatttcatggtaggccaatttctatataacaattttct 607  Q
    |||| ||| ||||||||||||||||||| |||||||| | |||||||||||    
T  8580415 ataactttggagtaatttcatggtaggcaaatttctaaacaacaattttct 8580365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 9297498 - 9297540
Alignment:
Q  258 aaagacaaaagcagaagatccttt-agaaaggccagagggaga 299  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  9297498 aaagataaaagcagaagatccttttagaaaggccagagggaga 9297540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 519
Target Start/End: Complemental strand, 11425262 - 11425224
Alignment:
Q  481 aatctcatcgaagtaagttcaacaatatcacaaaagaat 519  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  11425262 aatctcatccaagtaagttcaacaaaatcacaaaagaat 11425224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 466
Target Start/End: Complemental strand, 12019835 - 12019789
Alignment:
Q  420 cccttacaatctcaatttaaatctttaggacaagaagccatccctgt 466  Q
    |||||||||| |||||||||||| || |||||||||| |||||||||    
T  12019835 cccttacaatgtcaatttaaatcctttggacaagaagtcatccctgt 12019789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 635 - 671
Target Start/End: Original strand, 10347170 - 10347206
Alignment:
Q  635 atagtctcaacattcataaattagcttgtcaaaataa 671  Q
    |||||||||||||||| |||| |||||||||||||||    
T  10347170 atagtctcaacattcaaaaataagcttgtcaaaataa 10347206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 12019772 - 12019732
Alignment:
Q  482 atctcatcgaagtaagttcaacaatatcacaaaagaatagt 522  Q
    ||||||| |||||||| |||||||||||||||| |||||||    
T  12019772 atctcatagaagtaagctcaacaatatcacaaatgaatagt 12019732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 359 - 686
Target Start/End: Complemental strand, 41968408 - 41968072
Alignment:
Q  359 attccatcacaagaaacaacttgagcatcctg-tttcagctgcacatcacaggtccttta----accccttacaatctcaatttaaatctttaggacaag 453  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||      | ||||||||||||||||||||||| || |||||||    
T  41968408 attccatcagaagaaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatccttgggacaag 41968309  T
Q  454 aagccatccctgtggnnnnnnnnnnttaatctcatcgaagtaagttcaacaatatcacaaaagaatagttgataaaaaa----ccgtgcttttgaatgga 549  Q
    ||| ||||||||| |          | |||||||| |||||||||||||||||||||||||||||||||||||||||||    || ||||| |||| |||    
T  41968308 aagtcatccctgtcgaaaaaaa---tgaatctcattgaagtaagttcaacaatatcacaaaagaatagttgataaaaaaaaaaccatgcttctgaaagga 41968212  T
Q  550 actatgcataaatttagagtaatttcatggtaggccaatttctatataacaattttctcctctttacatacc---atggcatggcggtatagtctcaaca 646  Q
    ||||||||||||||  |||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||   ||  ||||| || || |||||||||    
T  41968211 actatgcataaattaggagtaatttcatggtaggccaatttctaaacaacaactttcttctctttacatacccaaatttcatggtggaatggtctcaaca 41968112  T
Q  647 ttcataaattagcttgtcaaaataattattcaggagtgaa 686  Q
     ||| |||| ||||||| ||||| ||||||||| ||||||    
T  41968111 ctcagaaataagcttgtaaaaatgattattcagtagtgaa 41968072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 108; Significance: 7e-54; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 300 - 683
Target Start/End: Original strand, 1674 - 2058
Alignment:
Q  300 aaaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctg 399  Q
    |||||| ||||||||||||||||| |  ||||||  | ||  ||||||||||  |||||||||||| ||||||||||||||||| || ||||||||||||    
T  1674 aaaatgagtgcagctccattcattatccattcaaaatctt--acaaaccaagcagactaattccattacaagaaacaacttgagaattctgtttcagctg 1771  T
Q  400 c---acatcacaggtccttta----accccttacaatctcaatttaaatctttaggacaagaagccatccctgtggnnnnnnnnnnttaatctcatcgaa 492  Q
    |   ||||||||| ||||| |    | ||||||||||||||||||||||| |  |||||||||| | ||||||| |          | ||||||||||||    
T  1772 ctgcacatcacagatccttcattccaacccttacaatctcaatttaaatcctccggacaagaagtcgtccctgtagaaaaaaa---tgaatctcatcgaa 1868  T
Q  493 gtaagttcaacaatatcacaaaagaatagttgataaaaaaccgtgcttttgaatggaactatgcataaattta-gagtaatttcatggtaggccaatttc 591  Q
    ||||||||||  |||||||||||  |||||  |||||||||| ||||||||||  |||||||||| ||  ||| ||||||||||||||||||||||||||    
T  1869 gtaagttcaatgatatcacaaaa--atagtctataaaaaaccatgcttttgaaatgaactatgcaaaagcttaagagtaatttcatggtaggccaatttc 1966  T
Q  592 tatataacaattttctcctctttacataccatggcatggcggtatagtctcaacattcataaattagcttgtcaaaataattattcaggagt 683  Q
    |  | ||||| |||||  |||||||||| || |||| || || |||||||||||||||| |||| |||| ||||||||||||||| ||||||    
T  1967 tcaacaacaactttcttttctttacataacacggcagggtggaatagtctcaacattcagaaataagctggtcaaaataattatttaggagt 2058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 301 - 593
Target Start/End: Original strand, 37461517 - 37461818
Alignment:
Q  301 aaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctgc 400  Q
    ||||| ||||||||||||||||| | |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  37461517 aaatgcgtgcagctccattcattatcaattcaaccttacccacaaaccaaggagactaattccatcacaagaaacaacttgagcaccctgtttcagctgc 37461616  T
Q  401 acatcacagg----tcctttaaccccttacaatctcaatttaaatctttaggacaagaagccatccctgtg--gnnnnnnnnnnttaatctcatcgaagt 494  Q
    |||| |||||    |||||  ||||||||||||||||||||||||| |  ||||||||||   ||||||||  |          | ||||||||  ||||    
T  37461617 acattacaggttcttccttccaccccttacaatctcaatttaaatcctccggacaagaagtggtccctgtgtaggaaaaacaaatgaatctcatttaagt 37461716  T
Q  495 aagttcaacaatatcacaaaagaatagttgat-aaaaaaccgtgcttttgaatggaactatgc--ataaatttagagtaatttcatggtaggccaatttc 591  Q
    |||||||||||||||| |||||||| |||||| |||||||| || | ||||| || |||||||  ||||||||  |||||| ||||||||||||| ||||    
T  37461717 aagttcaacaatatcaaaaaagaatggttgataaaaaaaccatgttcttgaaaggtactatgcatataaatttgaagtaatatcatggtaggccattttc 37461816  T
Q  592 ta 593  Q
    ||    
T  37461817 ta 37461818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 345 - 620
Target Start/End: Original strand, 26574122 - 26574397
Alignment:
Q  345 aaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggtcct----ttaaccccttacaatctcaatttaaa 440  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    |  | | |||||| ||||||||||||    
T  26574122 aaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggtccttccgtccatcgcttacagtctcaatttaaa 26574221  T
Q  441 tctttaggacaagaagccatccctgtggnnnnnnnnnnttaatctcatcgaagtaagttcaacaatatcacaaaagaatagttgataaaaaaccgtgctt 540  Q
    |  |  |||||| ||| | |||||||||          | ||||||||| |||||||||||| ||||||||||||||||||||||| |||| || |||||    
T  26574222 ttctctggacaaaaagtcgtccctgtgg---gaaaaaatgaatctcatcaaagtaagttcaaaaatatcacaaaagaatagttgat-aaaagccatgctt 26574317  T
Q  541 ttgaatggaactatgcataaatttagagtaatttcatggtaggccaatttctatataacaattttctcctctttacatac 620  Q
    || || ||||||||||||||| || |||||| ||||||||  |||||| | || |  |||| ||||| ||||||||||||    
T  26574318 tttaaaggaactatgcataaaattggagtaagttcatggtgcgccaatatgtaaacgacaactttcttctctttacatac 26574397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 481 - 618
Target Start/End: Complemental strand, 29462198 - 29462062
Alignment:
Q  481 aatctcatcgaagtaagttcaacaatatcacaaaagaatagttgataaaaaaccgtgcttttgaatggaactatgcataaatttagagtaatttcatggt 580  Q
    ||||||||  |||||||||||||||||||| |||||||||| ||||||||||||    ||||||| | || ||||| |||||||  ||||||||||||||    
T  29462198 aatctcatgtaagtaagttcaacaatatcataaaagaatag-tgataaaaaaccaactttttgaaagtaattatgcttaaatttgaagtaatttcatggt 29462100  T
Q  581 aggccaatttctatataacaattttctcctctttacat 618  Q
      |  |||||||| | ||||||||||| ||| ||||||    
T  29462099 gagtaaatttctacaaaacaattttctgctccttacat 29462062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 29462349 - 29462264
Alignment:
Q  301 aaatgggtgcagctccattcattgtaaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcat 386  Q
    ||||| ||| |||| ||||| || | ||||||| | || ||||||| |||||||||||||||||| || |||||||||||||||||    
T  29462349 aaatgtgtggagctacattccttatcaattcaatccttcccacaaaacaaggtgactaattccattactagaaacaacttgagcat 29462264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 29444227 - 29444187
Alignment:
Q  482 atctcatcgaagtaagttcaacaatatcacaaaagaatagt 522  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  29444227 atctcatagaagtaagctcaacaatatcacaaaagaatagt 29444187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 10856106 - 10856058
Alignment:
Q  356 ctaattccatcacaagaaacaacttgagcatcctgtttcagctgcacat 404  Q
    |||||||||||  |||||||||||  |||||||||||| ||||||||||    
T  10856106 ctaattccatcggaagaaacaactcaagcatcctgttttagctgcacat 10856058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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