View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6245_low_2 (Length: 607)

Name: NF6245_low_2
Description: NF6245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6245_low_2
NF6245_low_2
[»] chr5 (6 HSPs)
chr5 (18-403)||(9394334-9394720)
chr5 (435-597)||(9394152-9394314)
chr5 (456-511)||(9394011-9394066)
chr5 (452-511)||(9394125-9394184)
chr5 (527-597)||(9394038-9394108)
chr5 (192-248)||(9393947-9394002)
[»] chr7 (1 HSPs)
chr7 (36-314)||(1341951-1342243)
[»] chr6 (3 HSPs)
chr6 (18-162)||(31944088-31944232)
chr6 (452-490)||(31943650-31943688)
chr6 (220-290)||(31943907-31943977)
[»] chr2 (1 HSPs)
chr2 (67-162)||(35535401-35535496)
[»] chr4 (1 HSPs)
chr4 (77-162)||(5644293-5644378)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 9394720 - 9394334
Alignment:
Q  18 atttgaaatttactgctatatgattgtgttttgtagtgaatcgagtgaggatgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9394720 atttgaaatttactgctatatgattgtgttttgtagtgaatcgagtgaggatgaaagtttgaaggcaaagtttcactaccgtgaagccaaggttgatggg 9394621  T
Q  118 attttatataagctggaggataatgcttatgtcaaggtttctattctatttcatataatgttcataaatttctgtttttgatttcttgttgaaaatttga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9394620 attttatataagctggaggataatgcttatgtcaaggtttctattctatttcatataatgttcataaatttctgtttttgatttcttgttgaaaatttga 9394521  T
Q  218 tg-tttagggtttatttctttgattgcatgctggcaactgtgtttttatgttattttgtttgattttatgttgagaattttctgctttagggtttattca 316  Q
    || |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  9394520 tgttttagggtttatttctttgatttcatgttggcaactgtgtttttatgttattttgtttgattttatgttgaaaattttcttctttagggtttattca 9394421  T
Q  317 tatgatttcgtgttgaaaattgggttttagtgtttatttcttttattgcatgttggaaattctgtttctattttaattatgttgaaa 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9394420 tatgatttcgtgttgaaaattgggttttagtgtttatttcttttattgcatgttggaaattctgtttctattttatttatgttgaaa 9394334  T

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Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 435 - 597
Target Start/End: Complemental strand, 9394314 - 9394152
Alignment:
Q  435 atggttcattggtttgaatttcatgttgaaaactgtgttttatggttcatttctttgatttggtgatggaaattatgnnnnnnnnnnnnngattcatgtt 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||    
T  9394314 atggttcattggtttgaatttcatgttgaaaactgtgttttatggttcatttctttgatttggtgatggaaattatgttttttattttttgattcatgtt 9394215  T
Q  535 aaaattttggttctaggttcctttcttttgatttaatgttgaaaattgtgtttttggattcat 597  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9394214 gaaattttggttctaggttcctttcttttgatttaatgttgaaaattgtgtttttggattcat 9394152  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 511
Target Start/End: Complemental strand, 9394066 - 9394011
Alignment:
Q  456 catgttgaaaactgtgttttatggttcatttctttgatttggtgatggaaattatg 511  Q
    ||||||||||||||||||||| | |||||||||||||||||||| |||| ||||||    
T  9394066 catgttgaaaactgtgttttaggattcatttctttgatttggtgttggagattatg 9394011  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 452 - 511
Target Start/End: Complemental strand, 9394184 - 9394125
Alignment:
Q  452 atttcatgttgaaaactgtgttttatggttcatttctttgatttggtgatggaaattatg 511  Q
    |||| |||||||||| ||||||||  | |||||||||||||||||||| |||||||||||    
T  9394184 atttaatgttgaaaattgtgtttttggattcatttctttgatttggtgttggaaattatg 9394125  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 527 - 597
Target Start/End: Complemental strand, 9394108 - 9394038
Alignment:
Q  527 ttcatgttaaaattttggttctaggttcctttcttttgatttaatgttgaaaattgtgtttttggattcat 597  Q
    |||||||| ||| ||||||| |||||||||||  ||||||   |||||||||| |||||||| ||||||||    
T  9394108 ttcatgttgaaaatttggttttaggttccttttatttgataccatgttgaaaactgtgttttaggattcat 9394038  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 9394002 - 9393947
Alignment:
Q  192 tttttgatttcttgttgaaaatttgatgtttagggtttatttctttgattgcatgct 248  Q
    ||||||||||| ||||||||||||| | |||||| || |||||||||||| ||||||    
T  9394002 tttttgatttcatgttgaaaatttggt-tttaggattcatttctttgatttcatgct 9393947  T

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Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 36 - 314
Target Start/End: Complemental strand, 1342243 - 1341951
Alignment:
Q  36 tatgattgtgttttgtagtgaatcgagtgaggatgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggag 135  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||    
T  1342243 tatgattgtgttttgtagtgaattgagtgagggtgaaagtttgaaggcgaagtttcactatcatgaagcgaaggttgatgggattttatataagctggag 1342144  T
Q  136 gataatgcttatgtcaaggtttctattctatttcatataatgttcataaatttctgtttttg--------------atttcttgttgaaaatttgatg-t 220  Q
    ||||||||||||||||||||||||||| ||||| ||  |||||| |||||||| || |||||              ||||| |||||||| |||| || |    
T  1342143 gataatgcttatgtcaaggtttctattttattttattaaatgttgataaatttgtgcttttgttttattttactttatttcatgttgaaattttggtgtt 1342044  T
Q  221 ttagggtttatttctttgattgcatgctggcaactgtgtttttatgttattttgtttgattttatgttgagaattttctgctttagggtttatt 314  Q
    |||||||||||||||||||||||||| ||  || |||| | ||||||||||||||||||||||||||| | |||||| |  |||||||||||||    
T  1342043 ttagggtttatttctttgattgcatgttgaaaattgtg-tattatgttattttgtttgattttatgttcaaaattttgttttttagggtttatt 1341951  T

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Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 31944232 - 31944088
Alignment:
Q  18 atttgaaatttactgctatatgattgtgttttgtagtgaatcgagtgaggatgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatggg 117  Q
    |||||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  31944232 atttgaaaattaatgttatatgattgtgttttgtagtgaatcgagtgatgatgaaagtttcaaggcgaagtttcactaccgtgaagcgaaagttgatggg 31944133  T
Q  118 attttatataagctggaggataatgcttatgtcaaggtttctatt 162  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||    
T  31944132 attttgtataagctggacgataatgcttatgtcaaggtttctatt 31944088  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 490
Target Start/End: Complemental strand, 31943688 - 31943650
Alignment:
Q  452 atttcatgttgaaaactgtgttttatggttcatttcttt 490  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  31943688 atttcatgttgaaaaatgtgttttagggttcatttcttt 31943650  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 31943977 - 31943907
Alignment:
Q  220 tttagggtttatttctttgattgcatgctggcaactgtgtttttatgttattttgtttgattttatgttga 290  Q
    |||||| ||||||||| ||||| |||| ||  || |  || ||||||||||||||||||||||||||||||    
T  31943977 tttaggatttatttctatgattacatgttgaaaattcggtgtttatgttattttgtttgattttatgttga 31943907  T

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Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 35535496 - 35535401
Alignment:
Q  67 gatgaaagtttgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctatt 162  Q
    |||||||||||||||||| ||||||| ||||||||||| || ||||||||| || ||||||| |||||  ||||||||||||||||||||||||||    
T  35535496 gatgaaagtttgaaggcgtagtttcattaccgtgaagcgaaagttgatggggttatatataatctggataataatgcttatgtcaaggtttctatt 35535401  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 5644378 - 5644293
Alignment:
Q  77 tgaaggcgaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctatt 162  Q
    |||||||||||||||| ||||||||||  || ||||||||| || ||||||||||| | |||||||||||||| |||||| |||||    
T  5644378 tgaaggcgaagtttcattaccgtgaagtgaatgttgatggggttatatataagctgaatgataatgcttatgttaaggttcctatt 5644293  T

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