View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6245_low_4 (Length: 265)
Name: NF6245_low_4
Description: NF6245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6245_low_4 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 232737 - 232640
Alignment:
| Q |
159 |
atcagctttagcattttcatttcaaaccttaattttgtggagagtgacaaattgctcaatgagtttgacatcattagtggtccttttgacagaataat |
256 |
Q |
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| T |
232737 |
atcagcttcaacattttcatttcaaaccttaattttgtggagagtgacaaattgctcaatgagtttgacatcattagtggtccttttgacagaataat |
232640 |
T |
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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 14584638 - 14584735
Alignment:
| Q |
159 |
atcagctttagcattttcatttcaaaccttaattttgtggagagtgacaaattgctcaatgagtttgacatcattagtggtccttttgacagaataat |
256 |
Q |
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| T |
14584638 |
atcagcttcaacattttcatttcaaaccttaattttgtggagagtgacaaattgctcaatgagtttgacatcattagtggtccttttgacagaataat |
14584735 |
T |
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