View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6247_high_3 (Length: 388)
Name: NF6247_high_3
Description: NF6247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6247_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Complemental strand, 54378216 - 54377852
Alignment:
| Q |
20 |
tgtgaatcatgcaggcaccaagcaatgtaccccagacagcaggacccggctcaacaggcattttctttataaattctaaggctttttctaactgaccaga |
119 |
Q |
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| T |
54378216 |
tgtgaatcatgcaggcaccaagcaatgtaccccagacagcaggacccggctcaacaggcattttctttataaattctaaggctttttctaactgtccaga |
54378117 |
T |
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| Q |
120 |
tcgtcccagaatgtccaccatgcatgcatagtgctcgattaagggctcaatcctgtatttattgaccatattatgaaaaatttcctctccttctcctact |
219 |
Q |
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| T |
54378116 |
tcgtcccagaatgtccaccatgcatgcatagtgctcgattaagggctcaatcctgtatttattgaccatattatgaaaaatttcctctccttctcctact |
54378017 |
T |
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| Q |
220 |
aagccagcatggctgcaagcatacaagactgaaagaaaagtgactgcagatggattataccctaaatgtaacatctcattataaagcttaagtgcttcat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54378016 |
aagccagcatggctgcaagcatacaagactgaaagaaaagtgactgcagatggattataccctaaatgtaacatctcattataaagcttaagtgcttcat |
54377917 |
T |
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| Q |
320 |
gcccatatccatggagcccataaccaaaaatcatagtattccaagttacagtattcatctcactc |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
54377916 |
gcccatatccatggagcccataaccaaaaatcatagtattccaagttacagtattcttttcactc |
54377852 |
T |
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