View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6247_high_6 (Length: 291)
Name: NF6247_high_6
Description: NF6247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6247_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 136 - 276
Target Start/End: Complemental strand, 52302580 - 52302436
Alignment:
| Q |
136 |
cgacgtcgtatccccagtgtccgaaaaacgcctcatcgtcgacgtcttcatcctcttgaaaactgaagcaaaacaaacagcaaagaaagataaacagat- |
234 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52302580 |
cgacgtcgtatccccagtgtctgaaaaacgcctcatcgtcgacgtcttcatcctcttgaaaactgaagcaaaacaaacagcaaagaaagataaacagata |
52302481 |
T |
|
| Q |
235 |
---atagatagtataggattccgtgcattccaatttcgaaaccac |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52302480 |
cagatagatagtataggattccgtgcattccaatttcgaaaccac |
52302436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 52302715 - 52302666
Alignment:
| Q |
1 |
taacatatgcaccgtaaagttgtactatgaccaatttaatttaatattta |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52302715 |
taacatatgcaccgtaaagttgtactatgaccaatttaatttaatattta |
52302666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University