View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6247_low_1 (Length: 595)
Name: NF6247_low_1
Description: NF6247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6247_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 25609163 - 25608888
Alignment:
| Q |
13 |
tcactgggaataatgtagacaagggcacgcgcatgcgcgaggcagcactatcattggaaaacaatccgacatacgaagtgaatggcaccatatatgcgac |
112 |
Q |
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| T |
25609163 |
tcactgggaataatgtagacaagggcacgcgcatgcgcgaggtagcactatcattggaaaacaatcagacttacgaagtgaatggcaccatatatgcgac |
25609064 |
T |
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| Q |
113 |
tgagtcatatgaatgaaatctttctcaccgacttacaaagtgaaaatcaatttagatattgagattgaaggggaagggctcaaaggggaagttaatcaat |
212 |
Q |
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| T |
25609063 |
tgagtgatatgaatgaaatctttctcactgacttacaaagtgaaaatcaatttagattaagag-----------agggctcaaaggggaagttaatcaat |
25608975 |
T |
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| Q |
213 |
taatatgagaaaacctgaaggtatccaagattaagattaacctgaagggctcaaaggacagaaatcaaagaaagaatttgtataatatgttagc |
306 |
Q |
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| T |
25608974 |
taatatgagaaaatctgaaggtatccaagattaagaatacac------actc-aaggacagaaatcatagaaagaatttgtataatatgttagc |
25608888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 303 - 563
Target Start/End: Complemental strand, 25608858 - 25608591
Alignment:
| Q |
303 |
tagcaaatattggaaaaatcaaacaagcagaggcaaacagtatcaagtaagtcatcatgtgttcaacaaaaggaaaataatttagataaaagaaaagaac |
402 |
Q |
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| T |
25608858 |
tagcaaatattg-aaaaatcaaacaagcagcggaaaacagtatcgagtaagtcatcatgagtacaacagaaggataataatttagataaaagaaaagaac |
25608760 |
T |
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| Q |
403 |
acacataccttagaataataccctccac----------cagatcatcatgcatcacaaataataataactatgagtttgtatatatatttttaaaaccaa |
492 |
Q |
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| T |
25608759 |
acacataccttagaataataccctccactccactccaccagatcatcatgcatcacaaataataataactatgagtttgtatatat--ttcaaaaaccaa |
25608662 |
T |
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| Q |
493 |
cacaaaagaagcaaatatgaagggatgcagcctaacacgaatcccagtcaaacacttaatattgatgctct |
563 |
Q |
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| T |
25608661 |
cacaaaagaagcaaatatgaagggatgcaacctaacacgaatccaggtcaaacacttaaaattgatgctct |
25608591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 25607755 - 25607690
Alignment:
| Q |
364 |
ttcaacaaaaggaaaataatttagataaaagaaaagaacacacataccttagaataataccctcca |
429 |
Q |
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| T |
25607755 |
ttcaacaaaagcataataattttgataaaagaaaagaacatacataccttagaagaataccctcca |
25607690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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