View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6247_low_2 (Length: 402)
Name: NF6247_low_2
Description: NF6247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6247_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 387
Target Start/End: Original strand, 27976746 - 27977121
Alignment:
| Q |
12 |
tcatcagcccatggccttagaacccttgagaagctcatggctgaccaagataagcagcaaaacctttcggatttagaaaagaaattccgttcagaccttg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27976746 |
tcatcagcccatggccttagaacccttgagaagctcatggctgaccaagataagcggcaaaacctttcggatttagaaaagaaattccgttcagaccttg |
27976845 |
T |
|
| Q |
112 |
acgacctcctcgaggaaaatctcgagttttggctaagatttagcacattagttcatcagattcaaaagtttcaaaactcaatacaggacttaaaagcata |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | | |
|
|
| T |
27976846 |
acgacctcctcgaggaaaatctcgagttttggctaagatttagcacatcagttcatcagattcaaaagtttcaaaactcaatacaagacttaaaagtaga |
27976945 |
T |
|
| Q |
212 |
actaaggacaataaaggaaaacaacaaatccgaaggacattcgcattctaaacatcaacaacctatgcaatctcaacttaggccgatttttcgacattta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27976946 |
actaaggacaataaaggaaaacaacaaatccgaaggacattcacattctaaacatcaacaacctatgcaatctcaacttaggccgatttttcgacattta |
27977045 |
T |
|
| Q |
312 |
agagagattagaactgaattatcactttggcttgaacataatgcagtgttgcaggatgaactacaaggtagatatt |
387 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27977046 |
agagagattagaactgaattatcgctttggcttgaacataatgcagtgttgcaggatgaactacaaggtagatatt |
27977121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 28306740 - 28306854
Alignment:
| Q |
272 |
acctatgcaatctcaacttaggccgatttttcgacatttaagagagattagaactgaattatcactttggcttgaacataatgcagtgttgcaggatgaa |
371 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||| | ||||| ||||| ||||||| |||||| |
|
|
| T |
28306740 |
acctatgcaatcataacttag-ccgattttttgacatttaagagagaatagaattgaattatcactttggttggaacacaatgctttgttgcaagatgaa |
28306838 |
T |
|
| Q |
372 |
ctacaaggtagatatt |
387 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
28306839 |
ctacaagggagatatt |
28306854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 28306649 - 28306709
Alignment:
| Q |
161 |
agttcatcagattcaaaagtttcaaaactcaatacaggacttaaaagcataactaaggaca |
221 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
28306649 |
agttaatcagattcaaaagtttcaaaactcaatttaggacttaaattcagaactaaggaca |
28306709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 46039906 - 46039829
Alignment:
| Q |
150 |
tttagcacattagttcatcagattcaaaagtttcaaaactcaatacaggacttaaaagcataactaaggacaataaag |
227 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||| ||| | || ||||||||||||||| | ||||||| | ||||||| |
|
|
| T |
46039906 |
tttagcacttcagttcatcaaattcaaaagttccaacaatctttacaggacttaaaagtagaactaagaaaaataaag |
46039829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University