View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_high_1 (Length: 457)
Name: NF6248_high_1
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_high_1 |
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| [»] scaffold0426 (1 HSPs) |
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Alignment Details
Target: scaffold0426 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: scaffold0426
Description:
Target: scaffold0426; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 27 - 437
Target Start/End: Complemental strand, 433 - 21
Alignment:
| Q |
27 |
gtcccaacaaagggtaaagataacagcaaaatttcggaatnnnnnnnn-gtggtacccttgtatcatatacaaacttatatcattctgtgaagtcaactc |
125 |
Q |
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| T |
433 |
gtcccaacaaagggtaaagataacagtaaaatttcggaataaaaaaaaagtggtacccttgtatcatatacaaacttatatcattctatgaagtcaacta |
334 |
T |
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| Q |
126 |
tgttaaaatacatcttatatttatttcgtttaaaatttaggctccaaaacctcattttcgtccttaaaattgtaggatgttgtcaagttagtccctaaaa |
225 |
Q |
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| T |
333 |
tgttaaaatacatcttatatttatttcgtttaaaattcaggctccaaaacctcattttcgtccttaaaattgtaggatgttgtcaagttagtccctaaaa |
234 |
T |
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| Q |
226 |
ttaagaaattgacaaaaatatgcctaaaatcgaaaattgtccgtcattttagtcaacagtaacacattcataccttattcttttactgagcaattcattt |
325 |
Q |
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| T |
233 |
ttaagaaattgacaaaaatatgcctaaaatcgaaaatactccgtcattttagtcaacagtaacacattcataccttattcttttagtgagcaattcattt |
134 |
T |
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| Q |
326 |
taagtatttaactttagagaattacgtaaaatattgtctggactaaataacaaacaatttacaatttcaatg-tcctattaattcctaattttaggaatc |
424 |
Q |
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| T |
133 |
taagtatttaactttacagaattacgtaaaatattgtctggactaaataacaaacaatttacaatttcaatgttcctgttaattcctaattttaggaatc |
34 |
T |
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| Q |
425 |
aactcaccagaac |
437 |
Q |
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| T |
33 |
aactcaccagaac |
21 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 111 - 437
Target Start/End: Complemental strand, 13725066 - 13724715
Alignment:
| Q |
111 |
ctgtgaagtcaactctgttaaaatacatcttatatttatttcgtttaaaatttaggctccaaaacctcattttcgtccttaaaattgtaggatgttgtca |
210 |
Q |
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| T |
13725066 |
ctgtgaactcaactctgttaaaatacatcttatatttatttcgtttaaaattcagactctgaaacctcatattcatctttgaaattgtaggatgttgtca |
13724967 |
T |
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| Q |
211 |
agttagtccctaaaattaagaaattgacaaaaatatgcctaaaatcgaaaattgtccgtcattttagtcaacagtaac-------------------aca |
291 |
Q |
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| T |
13724966 |
agttagtccctaaaattaagaaattgacaaaaatatccctgaagttgtaaattgtcggtcattttagctaacagtaacagatatgcaaactaacttgaca |
13724867 |
T |
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| Q |
292 |
ttcataccttattcttttactgagcaa-ttcattttaagtatttaactttagagaattacgtaaaatattgtctggactaaataacaaacaatttacaat |
390 |
Q |
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| T |
13724866 |
ttcataagtaatttttttactgaccaatttcattctaagtatttaactttagagactaatttaaaatattgtctggactacataaccaacaatttacaat |
13724767 |
T |
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| Q |
391 |
ttca---atgt-cctattaa-ttcctaattttaggaatcaactcaccagaac |
437 |
Q |
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| T |
13724766 |
tccaaagatgtacttgttaatttcgtaattttaggaatcaactgaccagaac |
13724715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 358 - 437
Target Start/End: Complemental strand, 13724641 - 13724561
Alignment:
| Q |
358 |
attgtctggactaaataacaaacaatttacaatttcaatg-tcctattaattcctaattttaggaatcaactcaccagaac |
437 |
Q |
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| T |
13724641 |
attgtctggactaaataacaaacaatttacaatttcaatgttcctgttaattcctaattttaggaatcaactcaccagaac |
13724561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 7969386 - 7969335
Alignment:
| Q |
172 |
aaacctcattttcgtccttaaaattgtaggatgttgtcaagttagtccctaa |
223 |
Q |
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| T |
7969386 |
aaacctcattttggtccttataattgtcggatgttgtcatgtttgtccctaa |
7969335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 35516186 - 35516272
Alignment:
| Q |
190 |
taaaattgtaggatgttgtcaagttagtccctaaaattaagaaattgacaaaaatatgcctaaaatcgaaaattgtccgtcatttta |
276 |
Q |
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| T |
35516186 |
taaaattgtaaggtgttgtcatgttggtctttggaattaagaaattgacaaaaatatctctgaaattgtaaattgtcagtcatttta |
35516272 |
T |
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