View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_high_13 (Length: 285)
Name: NF6248_high_13
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 39580851 - 39581108
Alignment:
| Q |
11 |
cagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgttt |
110 |
Q |
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| T |
39580851 |
cagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgttt |
39580950 |
T |
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| Q |
111 |
ggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgtta |
210 |
Q |
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| T |
39580951 |
ggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgtta |
39581050 |
T |
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| Q |
211 |
ctttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatata |
268 |
Q |
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| T |
39581051 |
ctttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatata |
39581108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 39544489 - 39544715
Alignment:
| Q |
30 |
gaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgt |
129 |
Q |
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| T |
39544489 |
gaaacattgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacataccatgtaggtgttgtttggtatggtagaaaattcat |
39544588 |
T |
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| Q |
130 |
agaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatgattgacttgttactttggagcttttgctgaa |
229 |
Q |
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| T |
39544589 |
aggaagactcggaatggaatatccttgctgtttggtagagaggtgaaa---------aca---ctggtgattgacttgttactttggagctttttctgaa |
39544676 |
T |
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| Q |
230 |
aactgttttcggataagtagggtttgattcaccaatata |
268 |
Q |
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| T |
39544677 |
acttgtttttgggtaagtagggtttgattcaccaatata |
39544715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 39521683 - 39521842
Alignment:
| Q |
17 |
gaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacg |
116 |
Q |
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| T |
39521683 |
gaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacgtaccatgtaagtgttgcttggaacg |
39521782 |
T |
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| Q |
117 |
gttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
176 |
Q |
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| T |
39521783 |
gttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaa |
39521842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 39525193 - 39525339
Alignment:
| Q |
30 |
gaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgt |
129 |
Q |
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|||||| ||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
39525193 |
gaaacggtgaattttgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatgtaggtgttgtttggtacggttttgaactcgt |
39525292 |
T |
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| Q |
130 |
agaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
176 |
Q |
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| T |
39525293 |
ataaagattcggaatgaaatatccttgctgtttggtagagaggtgaa |
39525339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 39576328 - 39576487
Alignment:
| Q |
17 |
gaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacg |
116 |
Q |
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|||||| |||| ||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||| | |
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| T |
39576328 |
gaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgttgtttggtatg |
39576427 |
T |
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| Q |
117 |
gttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
176 |
Q |
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| T |
39576428 |
gtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaa |
39576487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 39511457 - 39511596
Alignment:
| Q |
37 |
tgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttggtacggttttgaattcgtagaaaga |
136 |
Q |
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||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||| || ||||||||||| | ||||||||||||||| |||| |
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| T |
39511457 |
tgaattttgcagtggaaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatataggtgttgtttgggatggttttgaattcgtaccaaga |
39511556 |
T |
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| Q |
137 |
cttggaagggaatataattgctgtttggtagagaggtgaa |
176 |
Q |
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| |||| |||| || |||| ||||||||||||| |||| |
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| T |
39511557 |
ttcggaacggaaaatccttgcagtttggtagagagatgaa |
39511596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 39521851 - 39521925
Alignment:
| Q |
197 |
tgattgacttgttactttggag---cttttgctgaaaactgttttcggataagtagggtttgattcaccaatata |
268 |
Q |
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| T |
39521851 |
tgattgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatata |
39521925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 39525345 - 39525419
Alignment:
| Q |
194 |
tgatgattgacttgttactttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatata |
268 |
Q |
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| T |
39525345 |
tgatgattgactggtttctatggagcttttgctgaaacttgttttagggtagttggggtttgattccccaatata |
39525419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 3331579 - 3331509
Alignment:
| Q |
42 |
tttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttgg |
112 |
Q |
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| T |
3331579 |
tttgcagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgg |
3331509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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