View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_high_14 (Length: 285)
Name: NF6248_high_14
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 37040545 - 37040694
Alignment:
| Q |
19 |
gatattgcattcgtatacaaaaagaccttagaacgaaactccaaaatcacaacctcaaaataagcctagctaaccttacaaatattaaacgtaaatatgc |
118 |
Q |
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| T |
37040545 |
gatattgcattcgtatacaaaaagaccttagaacgaaactccaaaatcacaacctaaaaataagcctagctaaccttacaaatattaaacgtaaatatgc |
37040644 |
T |
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| Q |
119 |
atttttacttatatttcattcttcatgagagagtagtgcaaccacaaata |
168 |
Q |
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| T |
37040645 |
atttttacttatatttcattcttcatgagagagtagtgcaacctcaaata |
37040694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 125 - 273
Target Start/End: Original strand, 37040716 - 37040864
Alignment:
| Q |
125 |
acttatatttcattcttcatgagagagtagtgcaaccacaaatactataccttgaagacaactttagtcctattcgagagatcataatccgtctgatgca |
224 |
Q |
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| T |
37040716 |
acttatatttcattcttaatgagagagtagtgcaaccacaaatactataccttgaagacaactttagtcctattcgagagatcataatccgtctaatgca |
37040815 |
T |
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| Q |
225 |
tcaaagttattgttgtagtgcaaattaattagcgccctattagccgttc |
273 |
Q |
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| T |
37040816 |
tcaaagttattgttgtagtgcaaattaattagcgccctattagccgttc |
37040864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 37018879 - 37018933
Alignment:
| Q |
219 |
gatgcatcaaagttattgttgtagtgcaaattaattagcgccctattagccgttc |
273 |
Q |
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| T |
37018879 |
gatgcatcaaagttattgctgtagtgcaaattatttagcaccctactagccgttc |
37018933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 37018639 - 37018733
Alignment:
| Q |
53 |
gaaactccaaaatcacaacctcaaaataagcctagctaaccttacaaatat----taaacgtaaatatgcatttttacttatatttcattcttcatgag |
147 |
Q |
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| T |
37018639 |
gaaactccaaaatcataacctaaaaataagccta----accttgcaaatatatattaaacgtaaatatggagttttacttttatttcatttttcatgag |
37018733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 37018788 - 37018827
Alignment:
| Q |
167 |
tactataccttgaagacaactttagtcctattcgagagat |
206 |
Q |
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| T |
37018788 |
tactatacgttgaagacaactttagtcctattcgagagat |
37018827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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