View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_high_16 (Length: 256)
Name: NF6248_high_16
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_high_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 4749204 - 4749444
Alignment:
| Q |
19 |
tataaagcactcaaggtaa---attatatactcatttattcatctaagtacacaatttgattcacaccttatagttacatttnnnnnnntcctattgtgt |
115 |
Q |
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| T |
4749204 |
tataaagcactcaaggtaattaattatatactcatttattcatctaagtacacaatttgatttacaccttatagttacatttaaaaaaatcctattgtgt |
4749303 |
T |
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| Q |
116 |
ttaggcacgaaagaagttggtgaagctgttgaaaggcttggtggatcataagaggagaaacaataataatgaaaaacaacagacnnnnnnngatttgatg |
215 |
Q |
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| T |
4749304 |
ttaggcacgaaagaagttggtgaagctgttgaaaggtttggtggatcataagaggagaaacaataataatgaaaaacaacagacaaaaaaagatttgatg |
4749403 |
T |
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| Q |
216 |
gagttgttgatggaagccagagacgacgagggtgagaagtt |
256 |
Q |
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| T |
4749404 |
gagttgttgatggaagccagagacgacgagggtgagaagtt |
4749444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 4757783 - 4757856
Alignment:
| Q |
111 |
tgtgtttaggcacgaaagaagttggtgaagctgttgaaaggcttggtggatcataagaggagaaacaataataa |
184 |
Q |
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| T |
4757783 |
tgtgtttaggcaagaaagaagttgatgaagctattgcaagccttggtggatcaaaaaaggaggaataataataa |
4757856 |
T |
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