View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_high_21 (Length: 247)
Name: NF6248_high_21
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 33273500 - 33273710
Alignment:
| Q |
20 |
gctatgtcttcattgatgtgatcatctttaatagcattattttgtttctttctttgagtgagagagtttagaaatgagagcttggaagccatgaaatgaa |
119 |
Q |
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| T |
33273500 |
gctatgtcttcattgatgtgatcatctttaatagcattattttgtttctttctttgagtgagagagtttagaaatgagagcttggaagccatgaaatgaa |
33273599 |
T |
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| Q |
120 |
tgtgtgggaaaattatgttccacgctataaggttagggaaattaggttaggtatgtttgtatattatttattgttgaacacgtcgtatgttaaatatgtg |
219 |
Q |
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| T |
33273600 |
tgtgtgggaaaattatgttccacgctataaggttagggaaattaggttaggtatgtttgtatattatttattgttgaacacgtcgtatgttaaatatgtg |
33273699 |
T |
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| Q |
220 |
atatcgatttt |
230 |
Q |
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| T |
33273700 |
atatcgatttt |
33273710 |
T |
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