View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_high_4 (Length: 396)
Name: NF6248_high_4
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Complemental strand, 46130337 - 46129970
Alignment:
| Q |
11 |
cagagacaataatggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttca |
110 |
Q |
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| T |
46130337 |
cagagacaataatggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttca |
46130238 |
T |
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| Q |
111 |
atacatgagacgttgaaattctgtaagcgatcgactcatacatagatgcatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaag |
210 |
Q |
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| T |
46130237 |
atacatgagacattgaaattgtgtaagcgatcgactcatacatagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaag |
46130138 |
T |
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| Q |
211 |
acatcacctgttctttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaa |
310 |
Q |
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| T |
46130137 |
acatcacctgttctttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaa |
46130038 |
T |
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| Q |
311 |
tcccgcggtgacattgatcagagtccatgctgccatggactgcagatataatatttgtgagtgaggtc |
378 |
Q |
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| T |
46130037 |
tcccgcggtgacattgatcagagtccatgctgccatggactgcagatataatatttgtgagtgaggtc |
46129970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 365
Target Start/End: Complemental strand, 46124325 - 46123974
Alignment:
| Q |
14 |
agacaataatggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttcaata |
113 |
Q |
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| T |
46124325 |
agacaatagtggagaaagtgcaccatgatttaaaacaatatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaata |
46124226 |
T |
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| Q |
114 |
catgagacgttgaaattctgtaagcgatcgactcatacatagatgcatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagaca |
213 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46124225 |
catgagacattgaaattgtgtaagcgatcgactcatacatagatacatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagaca |
46124126 |
T |
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| Q |
214 |
tcacctgttctttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaatcc |
313 |
Q |
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| T |
46124125 |
tcacctgttctttgccgtcatcactgccagagctcagaagcttcacaagcagaggaacagcaccatgttcaatcacagtatttgtatgttcagacaatcc |
46124026 |
T |
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| Q |
314 |
cgcggtgacattgatcagagtccatgctgccatggactgcagatataatatt |
365 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46124025 |
cgcagtgacattgatcagagtccatgctgccatggactgcagatataatatt |
46123974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 378
Target Start/End: Complemental strand, 46703121 - 46702754
Alignment:
| Q |
11 |
cagagacaataatggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |||| | |||||| ||| | |||||||||||||||||||||||||||||||||||| |
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| T |
46703121 |
cagagacaataatggagaaagtgcaccattatttaaaacaagatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttca |
46703022 |
T |
|
| Q |
111 |
atacatgagacgttgaaattctgtaagcgatcgactcatacatagatgcatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaag |
210 |
Q |
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||||||||||| ||||||||||||||| |||| || ||||||||||| ||||||||||| || |||||||||| |||||||||||| |||||||| |||| |
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| T |
46703021 |
atacatgagacattgaaattctgtaagggatcaacacatacatagatacatgcatacacaatggttttctcaatgcaattatgccaagagattgaagaag |
46702922 |
T |
|
| Q |
211 |
acatcacctgttctttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaa |
310 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46702921 |
acatcacctgttctttgccgtcatcacaaccagagctcagaagctgcacaagcagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaa |
46702822 |
T |
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| Q |
311 |
tcccgcggtgacattgatcagagtccatgctgccatggactgcagatataatatttgtgagtgaggtc |
378 |
Q |
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|||||| | || |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46702821 |
tcccgccgcgatattggtcagtgtccatgctgccatggactgcagatataatatctgtgagtgaggtc |
46702754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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