View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_high_6 (Length: 387)
Name: NF6248_high_6
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_high_6 |
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| [»] scaffold0426 (1 HSPs) |
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Alignment Details
Target: scaffold0426 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: scaffold0426
Description:
Target: scaffold0426; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 506 - 881
Alignment:
| Q |
1 |
cataaattgatctgttcaagcaatcagcgacacttctaataaaataaaatgaacaaacacttttatattgtgaactatgatatactaaattttaaattgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
506 |
cataaattgatctgttcaagcaatcagcgacacttctaataaaataaaatgaacaaacacttttatactgtgaactatgatatactaaattgtaaattgt |
605 |
T |
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| Q |
101 |
actgacatgaatgatttttggctgtgacatgaacaattacgtcaattatgcagaaattctggtgtgcaagtgtctgttgaacctacaaatattcgggact |
200 |
Q |
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| T |
606 |
actgacatgaatgatttttggctgtgacatgaacaattacgtcaattatgcagaaattctggtgtgcatgtgtctgttgaacctacaaatattcgggact |
705 |
T |
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| Q |
201 |
ccttgtatcgagcatcagttaatttggttttagatgcttgcagcaagtgtgatcttcatagtcttgcgtctgtgtccctttctttactgctagatagcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
706 |
ccttgtatcgagcatcagttaatttggttttagatgcttgcagcaagtgtgatcttcatagtcttgcgtctgtgtctctttctttactgctagatagcag |
805 |
T |
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| Q |
301 |
ctgttaatgatgttgtgtacttctattttaatgattattttgtttatattcagtgcaccgacttactctacttcat |
376 |
Q |
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| T |
806 |
ctgttaatgatgttgtgtacttctattttaatgattattttgtttatattcagtgcaccgacttactctacttcat |
881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 100 - 375
Target Start/End: Original strand, 52726015 - 52726291
Alignment:
| Q |
100 |
tactgacatgaatgatttttggctgtg-acatgaacaattacgtcaattatgcagaaattctggtgtgcaagtgtctgttgaacctacaaatattcggga |
198 |
Q |
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||||||| |||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52726015 |
tactgacgtgaatgttttttggctgtgcacatgaacagttacgtcaattatgcagaaattctggtgtgcaagtgtctgttgaacctacaaatattcggga |
52726114 |
T |
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| Q |
199 |
ctccttgtatcgagcatcagttaatttggttttagatgcttgcagcaagtgtgatcttcatagtcttgcgtctgtgtccctttctttactgctagatagc |
298 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
52726115 |
atccttgtatcgagcatcagttaattttgttttagatgcttgcagcaggtgtgatcttcgtagtcctgcgtctgtgtccctttctttactgctaggtagc |
52726214 |
T |
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| Q |
299 |
agctgttaatgatgttgtgtacttctattttaatgattattttgtttatattcagtgcaccgacttactctacttca |
375 |
Q |
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|||||||||| ||| ||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52726215 |
agctgttaatcatgctgtatacttctgttttaatgattattttgtttatatttagtgcaccgacttactctacttca |
52726291 |
T |
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