View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_high_9 (Length: 352)
Name: NF6248_high_9
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 15 - 335
Target Start/End: Original strand, 34687411 - 34687731
Alignment:
| Q |
15 |
aacaacatgtatattataacgattagttgatgtttggttttcaggttttggtgaggaagatggtatgaaaaaatgtagggtgtttactaccaatgaagta |
114 |
Q |
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| T |
34687411 |
aacaacatgtatattataacgattagttgatgtttggttttcaggttttggtgaggaagatggtatgaaaaaatgtagggtgtttactaccaatgaagta |
34687510 |
T |
|
| Q |
115 |
atcgaggttaacgctgggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactccttcagtaccccggttctaactgatgaatggg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687511 |
atcgaggttaacgctgggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactccttcagtaccccggttctaactgatgaatggg |
34687610 |
T |
|
| Q |
215 |
gtgtcaccctcaactcactctaccatggcgctgattattatctggtatgcaacttttctcttatctaccatggagtattttactaatatatattatgagt |
314 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687611 |
gtgtcaccctcaactcactctaccatggggctgattattatctggtatgcaacttttttcttatctaccatggagtattttactaatatatattatgagt |
34687710 |
T |
|
| Q |
315 |
gaacaacaattgcttagacac |
335 |
Q |
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||||||||||| ||||||||| |
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| T |
34687711 |
gaacaacaattacttagacac |
34687731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 130 - 271
Target Start/End: Original strand, 34697438 - 34697579
Alignment:
| Q |
130 |
gggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactccttcagtaccccggttctaactgatgaatggggtgtcaccctcaact |
229 |
Q |
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| T |
34697438 |
gggccctttaacgttcgtaaattctttggcgatggagcagttctgcttgactcctccggtgtcccggttctaaccgatgagtggggtgtcacactcaact |
34697537 |
T |
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| Q |
230 |
cactctaccatggcgctgattattatctggtatgcaactttt |
271 |
Q |
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| T |
34697538 |
cactccaccatggggttgattatttcctggtctgcaattttt |
34697579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 24968926 - 24969113
Alignment:
| Q |
55 |
tcaggttttggtgaggaagatggtatgaaaaaatgtagggtgtttactaccaatgaagtaatcgaggttaacgctgggccctttaacgttcgtgaatcct |
154 |
Q |
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|||||||||||| |||||||||||| || ||||| ||||||| |||||| || ||| |||||||| | || ||| |||||||||||||||||| | |
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| T |
24968926 |
tcaggttttggtaaggaagatggtacgacaaaatatagggtggttactaatggtgccgtattcgaggttcatgcagggtcctttaacgttcgtgaattgt |
24969025 |
T |
|
| Q |
155 |
ttggtaatagagcagttctgtttgactccttcagtaccccggttctaactgatgaatggggtgtcaccctcaactcactctaccatgg |
242 |
Q |
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| T |
24969026 |
ttggtgatgaagcagttctatttgactcctttggtaccccggttctaaccgatgagtggggtgtccccctcaactcactccaccatgg |
24969113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 8285698 - 8285828
Alignment:
| Q |
130 |
gggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactccttcagtaccccggttctaactgatgaatggggtgtcaccctcaact |
229 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| |||| || |||||||| ||||| |||||||| |||||| | | |
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| T |
8285698 |
gggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcctctggtactccagttctaacagatgagtggggtgttaccctcgatt |
8285797 |
T |
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| Q |
230 |
cactctaccatggcgctgattattatctggt |
260 |
Q |
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| ||| ||||||| ||||| ||||| ||||| |
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| T |
8285798 |
cgctccaccatggtgctgagtattacctggt |
8285828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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