View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_low_1 (Length: 618)
Name: NF6248_low_1
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 36936076 - 36936392
Alignment:
| Q |
17 |
tttgtatgctcagattgactacaggaagtctcgaaagtgaccattagatggttgtagaagagatcgaggctggagacatctcacattagcaatgtcctca |
116 |
Q |
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| T |
36936076 |
tttgtatgctcagattgactacaggtagtctcgaaagtgaccattagatggttttagaagagatcgaggttggagacatctcacattagcaatgtcctca |
36936175 |
T |
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| Q |
117 |
ggatgcaattccaaaaggtcaaacacatttagggtttttcgacaaattgaatgcaataacaacaaactcgacatagtctaaactaaagaccaccaaaaga |
216 |
Q |
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| T |
36936176 |
ggatgcaattccaaaaggtcaaacatatttagggtttttcgacaaattgaacacaataacaacaaactcgacatagtctaaactaaagaccaccaaaaga |
36936275 |
T |
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| Q |
217 |
gaaataaaacagataaaatagtaaagtgtcgggttgaaacatgataggacatttctacccggatttagactggagaagtatatctttcctaggagttggg |
316 |
Q |
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| T |
36936276 |
gaaataaaacagataaaatagtaaagtgtcaggttgaaacatgataggacatttctacccggatttagactggagaagtatatctttcctaggagttggg |
36936375 |
T |
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| Q |
317 |
cgtttgggattctgacc |
333 |
Q |
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| T |
36936376 |
catttgggattctgacc |
36936392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 329 - 603
Target Start/End: Original strand, 36942413 - 36942687
Alignment:
| Q |
329 |
tgacccatgagtgtagctttgataatggagagagggaggttttcaatgaggatatgtggttgagaggttgttgtttgtgatggcgatcgctgggcattgt |
428 |
Q |
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| T |
36942413 |
tgacccatgagtgtagctttgataatggagagagggatgttttcaatgaggatatgtggttgagaggttgttgtttgtgatggcgatcgctgggcattgt |
36942512 |
T |
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| Q |
429 |
ggtgtttaatctgtggcttccgaaacacgacccatgggatcggagcaccattggaagtgtgggttgaagaaatgtcgagaaggagagggaatagcatcac |
528 |
Q |
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| T |
36942513 |
ggtgtttaatctgtggcttccgaaacacgactcatgggatcggagcaccattggaagtgtgggttgaagaaatgtcgagaaggagagggaatagcatcac |
36942612 |
T |
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| Q |
529 |
acccacaagatgggagtcgaattgagctccactagggagggagaaagacaaacgacgatggagaaccaaaacact |
603 |
Q |
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| T |
36942613 |
acccaccagatgggagtcgaattgagctccactagggagggagaaagacaaacgacgatggagaaccaaaacact |
36942687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 36956993 - 36957044
Alignment:
| Q |
87 |
tggagacatctcacattagcaatgtcctcaggatgcaattccaaaaggtcaaa |
139 |
Q |
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| T |
36956993 |
tggagacatctcgcattagcaatatcctcagg-tgcaatttcagaaggtcaaa |
36957044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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