View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_low_13 (Length: 286)
Name: NF6248_low_13
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 3887609 - 3887859
Alignment:
| Q |
14 |
gagaatcgaacatgtaacctcgaggaggaggttttgttgttattattgtttgagtctgtctataagtttggttttcaataatacttactctatatattt- |
112 |
Q |
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| T |
3887609 |
gagaatcaaacatatgacctcgaggaggaggttttgttgttattattgtttgagtctgtctataagtttggttttcaataatacttactctatatattta |
3887708 |
T |
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| Q |
113 |
--------ggtgtgatttaagttccaattcgcaacaagattattaaacttcatttattgtacagtttt-ttaattaagtgtaaaataacccaaaagtaaa |
203 |
Q |
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| T |
3887709 |
agtttattggtgtgatttaagttcgaattcgcaacaaaattattaaacttaatttattgtacagtttttttaattaagtgtaaaataacccaaaagtaaa |
3887808 |
T |
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| Q |
204 |
ctcaatagggaacaaagatataatgactactgacgcaacaacaagaacaac |
254 |
Q |
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| T |
3887809 |
ctcaatagggaacaaagatataatgactactgacgcaacaacaagaacaac |
3887859 |
T |
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