View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_low_18 (Length: 254)
Name: NF6248_low_18
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_low_18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 36942565 - 36942801
Alignment:
| Q |
18 |
ggaagtgtgggttgaagaaatgtcgagaaggagagggaatagcatcacacccacaagatgggagtcgaattgagctccactagggagggagaaagacaaa |
117 |
Q |
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| T |
36942565 |
ggaagtgtgggttgaagaaatgtcgagaaggagagggaatagcatcacacccaccagatgggagtcgaattgagctccactagggagggagaaagacaaa |
36942664 |
T |
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| Q |
118 |
cgacgatggagaaccaaaacaccaacaaaagtggaaaattttgttgagggaaatttgtctatctaaaattataacaataattatttttagttgtaaagaa |
217 |
Q |
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| T |
36942665 |
cgacgatggagaaccaaaacactaacaaaagtggaaaattttgttgagggaaatttgtctatctaaaattataacaataattatttttagttgtaaagaa |
36942764 |
T |
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| Q |
218 |
aaacatacaaataaaatatttatgatacgatacatca |
254 |
Q |
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| T |
36942765 |
aaacatacaaataaaatatttgtgatacgatacatca |
36942801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 36950372 - 36950511
Alignment:
| Q |
115 |
aaacgacgatggagaaccaaaacaccaacaaaagtggaaaattttgttgagggaaatttgtctatctaaaattataacaataattatttttagttgtaaa |
214 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36950372 |
aaacgacgatggagaaccaaaacactaacaaaagtggaaaattttgttgagggaaatttgtctatctaaaattataacaataattatttttagttgtaaa |
36950471 |
T |
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| Q |
215 |
gaaaaacatacaaataaaatatttatgatacgatacatca |
254 |
Q |
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| T |
36950472 |
gaaaaacatacaaataaaatatttgtgatacgatacatca |
36950511 |
T |
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