View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_low_3 (Length: 448)
Name: NF6248_low_3
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 5540926 - 5540513
Alignment:
| Q |
18 |
tgaactcaattaaaatgaacaatgcgttgttatatatgcaaaagtcagaattcaaaccacatacactttacttattcaaaaatgaatgttcaggccgcac |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5540926 |
tgaactcaattaaaatgaacaattcgttgttatatatgcacaagtcagaattcaaaccacatacactttacttattcaaaactgaatgttcaggccgcac |
5540827 |
T |
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| Q |
118 |
cgcttnnnnnnnnnnnnnctcaagtacatataacaataaaagaactaataatgcacccttttcatggagtgtacctgaaaacagagtggatatacggcaa |
217 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5540826 |
cgcttaaaaaaaaaaaa-ctcaagtacatataacaataaaagaactaataatgcacccttttcatggagtgtacctgaaaacagagtgggtatacggcaa |
5540728 |
T |
|
| Q |
218 |
tataatcaagagggacctcttttcattccaagtaaaaaggacacannnnnnngttagaattagctagctttgctggatagaattgaattacgtagttttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5540727 |
tataatcaagagggacctcttttcattccaagtaaaaaggacacatttttttgttagaattagctagctttgctggatagaattgaattacgtagttttg |
5540628 |
T |
|
| Q |
318 |
atttaaattgacaattaaaacatagaccaagaagattattccttcaatttctttacatattttaattcaacatgttctcaattttcctttttaaggtacc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5540627 |
atttaaattgacaattaaaacatagaccaagaagattattccttcaatttctttacata-tttaattcaacatgttctcaattttcctttttaaggtacc |
5540529 |
T |
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| Q |
418 |
ctacctgagcttcaac |
433 |
Q |
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|||||||||||||||| |
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| T |
5540528 |
ctacctgagcttcaac |
5540513 |
T |
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