View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_low_6 (Length: 395)
Name: NF6248_low_6
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 28222808 - 28222418
Alignment:
| Q |
1 |
caccaccaccaaagaaaaagatattacctttgataaatgatttgtaaatacatcgataagtgctctttaaaccttaagacattttatgactctattaagc |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
28222808 |
caccaccaccaaagaaaaagataatacctttgataaatgatttgtaaatacattggtaagcgctctttaaaccttgagatattttatgactctattaagc |
28222709 |
T |
|
| Q |
101 |
cctataaatccaactcatctaacattctatagctaaaagannnnnnnnncttgtattgtatattttattttgctcaataaaattggccgaatttaattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28222708 |
cctataaatccaactcatctaacattctatagctaaaagattttttttccttgtattgtatattttattttgctcaataaaattggccaaatttaattga |
28222609 |
T |
|
| Q |
201 |
aattaataaaacggataataattacagaattacaaagtatccactactcgaaaaagaaaaataatccattgctgagaattcaaatttaatctccttcaag |
300 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28222608 |
aattaatgaaacggataataattactgaattacaaagtatccactactcgaaaaagaaaaataatccattgctgagaattcaaatttaatctccttcaaa |
28222509 |
T |
|
| Q |
301 |
acttcacaagcaacaaccattagcttgtctccaaagcatgctacaaataattaagttcataaatcataattagtcacgggtctctctgctc |
391 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28222508 |
acttcacaagcaacaaccattagcttgtttccgaagcatgctacaaattattaagttcataaatcataattagtcacgggtccctctgctc |
28222418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 18300714 - 18300666
Alignment:
| Q |
264 |
atccattgctgagaattcaaatttaatctccttcaagacttcacaagca |
312 |
Q |
| |
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|
| T |
18300714 |
atccattgctgggaattcaaatttgatctccttccagacttcacaagca |
18300666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 37613588 - 37613459
Alignment:
| Q |
183 |
ttggccgaatttaattgaaattaataaaacggataataattacagaattacaaagtatccactactcgaaaaagaaaaataatccattgctgagaattca |
282 |
Q |
| |
|
|||||||| ||||||||||||||| | |||| || |||||||| | ||||||||||||||| | || | || ||| | ||||||||||||||||| | |
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|
| T |
37613588 |
ttggccgagtttaattgaaattaacagaacgaatgataattactggattacaaagtatccattgctgggaattcaaatagtatccattgctgagaattta |
37613489 |
T |
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| Q |
283 |
aatttaatctccttcaagacttcacaagca |
312 |
Q |
| |
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||||| ||||||||| ||||||||||||| |
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|
| T |
37613488 |
aatttgatctccttcccgacttcacaagca |
37613459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 37790318 - 37790189
Alignment:
| Q |
183 |
ttggccgaatttaattgaaattaataaaacggataataattacagaattacaaagtatccactactcgaaaaagaaaaataatccattgctgagaattca |
282 |
Q |
| |
|
|||||||| ||||||||||||||| | |||| || |||||||| | ||||||||||||||| | || | || ||| | ||||||||||||||||| | |
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| T |
37790318 |
ttggccgagtttaattgaaattaacagaacgaatgataattactggattacaaagtatccattgctgggaattcaaatagtatccattgctgagaattta |
37790219 |
T |
|
| Q |
283 |
aatttaatctccttcaagacttcacaagca |
312 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |
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|
| T |
37790218 |
aatttgatctccttcccgacttcacaagca |
37790189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 32724057 - 32724004
Alignment:
| Q |
264 |
atccattgctgagaattcaaatttaatctccttcaagacttcacaagcaacaac |
317 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
32724057 |
atccattgctgggaattcaaatttgatctccttctagacttcacaagcaacaac |
32724004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 48941288 - 48941240
Alignment:
| Q |
264 |
atccattgctgagaattcaaatttaatctccttcaagacttcacaagca |
312 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| |||||||||||||| |
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|
| T |
48941288 |
atccattgctgggaattcaaatttgatctccttccagacttcacaagca |
48941240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 6946414 - 6946462
Alignment:
| Q |
264 |
atccattgctgagaattcaaatttaatctccttcaagacttcacaagca |
312 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||| |||||||||||||| |
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|
| T |
6946414 |
atccattgctgggagttcaaatttgatctccttccagacttcacaagca |
6946462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 19676841 - 19676889
Alignment:
| Q |
264 |
atccattgctgagaattcaaatttaatctccttcaagacttcacaagca |
312 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
19676841 |
atccattgctgggaattcaaatttgatctccttccagacttcacaagca |
19676889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 13232880 - 13232832
Alignment:
| Q |
264 |
atccattgctgagaattcaaatttaatctccttcaagacttcacaagca |
312 |
Q |
| |
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||||||||||| |||||||||||| ||||||||| |||||||||||||| |
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| T |
13232880 |
atccattgctgggaattcaaatttgatctccttccagacttcacaagca |
13232832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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