View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6248_low_9 (Length: 370)
Name: NF6248_low_9
Description: NF6248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6248_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 162 - 354
Target Start/End: Complemental strand, 9608808 - 9608618
Alignment:
| Q |
162 |
gattttaaacatctactatctactattttttaaagtaaagattgcatttggccccaacattaatctttaagcatatacaaattttggactttaccatacc |
261 |
Q |
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| T |
9608808 |
gattttaaacatctactatctactattttttaaagtaaagaatgcatttggccccaacattaatctttaagcatatacaaattttggactttaccatacc |
9608709 |
T |
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| Q |
262 |
taaaaacttgagcgcataaaatttaaatttataaccaacttttgaactcaaaacacaaagcttcaatttttaagcataaaattgagactttat |
354 |
Q |
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| T |
9608708 |
taaaaacttga--gcataaaatttaaatttataaccaacttttgaactcaaaacacaaagcttcaatttttaagcataaaattgagactttat |
9608618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 9579879 - 9579843
Alignment:
| Q |
167 |
taaacatctactatctactattttttaaagtaaagat |
203 |
Q |
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| T |
9579879 |
taaacatttactatctactattttttaaagtaaagat |
9579843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 9574680 - 9574632
Alignment:
| Q |
226 |
ctttaagcatatacaaattttggactttaccatacctaaaaacttgagc |
274 |
Q |
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| T |
9574680 |
ctttaagcaaataaaaaatttgaactttaccatacataaaaacttgagc |
9574632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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