View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6249_high_1 (Length: 468)
Name: NF6249_high_1
Description: NF6249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6249_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 4325974 - 4325526
Alignment:
| Q |
1 |
tagagagaaaaaatgaacacatgtatgcttatggaagcgggaaaataaaataaaggggacactcacactgctacagttaagtagttactagttaagatta |
100 |
Q |
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| T |
4325974 |
tagagagaaaaaatgaacacatgtatgcttatggaagcgggaaaataaaataaaggggacactcacactgctacatttaagtagttactagttaagatta |
4325875 |
T |
|
| Q |
101 |
cattctctgttagagtaatgttgtttacttgtttacatataaaggattttattgtgtatagattatatctttcaattataggcagtaataatttaggctt |
200 |
Q |
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| T |
4325874 |
cattctctgttagagtaatgttgtttacttgtttacatataaaggattttattgtgtatagattatatctttcaattataggcagtaataatttaggctt |
4325775 |
T |
|
| Q |
201 |
gttagtactttgtttgtttgatatcataggatagcataacatgtcaactatcaccgaaaggnnnnnnncaaggtttaaaagattctatcaaagataatgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
4325774 |
gttagtactttgtttgtttgatatcataggatagcataacatgtcaactatcaccgaaagg-aaaaaacaaggtttaaaaaattctatcaaagataatgt |
4325676 |
T |
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| Q |
301 |
tcagcaaaattattgacaaacttttcaatgatatttttggatataggatatcattttcttacaaccaccccaatatcatcaacgcaacggcatcacatac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4325675 |
tcagcaaaattattgacaaacttttcaatgatatttttggatataggatgtcattttcttacaaccactccaatatcatcaacgcaacggcatcacatac |
4325576 |
T |
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| Q |
401 |
caaaattagtggtccttcaaaccaatgttcttgttgtcgttgaagtttgt |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4325575 |
caaaattagtggtccttcaaaccaatgttcttgttgtcgttgaagtttgt |
4325526 |
T |
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