View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6249_high_9 (Length: 228)
Name: NF6249_high_9
Description: NF6249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6249_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 4325968 - 4326178
Alignment:
| Q |
1 |
ctctctaaattgggcctttggttcaacactatgatcatgacttccgttggttctgcgcgccaatgcctctagtcattttttcccttattgtttcaatttg |
100 |
Q |
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| T |
4325968 |
ctctctaaattgggcctttggttcaacactatgatcatgacttccgttggttctgcgcgccaatgcctctggtcattttttcccttattgtttcaatttg |
4326067 |
T |
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| Q |
101 |
ttgttagagtactagtttaaaaaatgagtttgtgctccttcctaccctcatttttctttgtaaatgaaatgaaaatagggtgaatcttttgcagtgattt |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4326068 |
ttgttag---actagtttaaaaaatgagtttgtgctccttcctaccctcatttttctttgtaaatgaaatgaaaatagggtgaatcttttgcagtgattt |
4326164 |
T |
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| Q |
201 |
gacttaattctgtg |
214 |
Q |
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|||||||||||||| |
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| T |
4326165 |
gacttaattctgtg |
4326178 |
T |
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