View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6249_low_12 (Length: 213)
Name: NF6249_low_12
Description: NF6249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6249_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 4848048 - 4847869
Alignment:
| Q |
19 |
gtgcaactatgggaactcacaatcatgaatatgaaggacatgaaagagaaacaatggctttgttaagcttggacagcatctactataacaacaatgcaga |
118 |
Q |
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| T |
4848048 |
gtgcaactatgggaactcacaatcatgaatatgaaggacatgaaagagaaacaatggctttgttaagcttggacagcatctactataacaacaatgcaga |
4847949 |
T |
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| Q |
119 |
ccatgaaaccaatagagaacattcttctcttgaccattcatcatacttttcaggtttttcttgtcatggaatgtatcaaa |
198 |
Q |
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| T |
4847948 |
ccatgaaaccaatagagaacattcttctcttgaccattcatcatacttttcaggtttttcttgtcatggaatgtatcaaa |
4847869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 19783117 - 19783232
Alignment:
| Q |
40 |
atcatgaatatgaaggacatgaaagagaaacaatggctttgttaagcttggacagcatctactataacaacaatgcagaccatgaaaccaatagagaaca |
139 |
Q |
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| T |
19783117 |
atcataaatatgaaggaaatgaaagagaaacaatggctttattaagcttagactgtatctactataacaacaatgcaggacatgaaaccaataaagaaca |
19783216 |
T |
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| Q |
140 |
ttcttctcttgaccat |
155 |
Q |
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| T |
19783217 |
ttcttctgttgaccat |
19783232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 32568623 - 32568546
Alignment:
| Q |
40 |
atcatgaatatgaaggacatgaaagagaaacaatggctttgttaagcttggacagcatctactataacaacaatgcag |
117 |
Q |
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||||||||||| ||||| |||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||| |
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| T |
32568623 |
atcatgaatataaaggaaatgaaagagaaacaatggctttattaagcttagactgtatctactataacaacaatgcag |
32568546 |
T |
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