View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6249_low_2 (Length: 444)
Name: NF6249_low_2
Description: NF6249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6249_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 55301662 - 55301406
Alignment:
| Q |
13 |
agcaaaggaatctatatacacagacataaacatgctaaaaatagtagaatacaaggacaagattgatgaatgaatatacctgcactccgtcagcgccaaa |
112 |
Q |
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| T |
55301662 |
agcaaaggaatctatatacacagacataaacatgctaaaaatagtagaatacaaggacaagattgatgaatgaatatacctgcactccgtcagcgccaaa |
55301563 |
T |
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| Q |
113 |
tacctcccgaagcatagcccgtatcatggatctctttcctacatttgggggtccttcaaatataaaatgattacagccacacccacctttaacctatata |
212 |
Q |
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| T |
55301562 |
tacctcccgaagcatagcccgtatcatggatctctttcctacatttgggggtccttcaaatataaaatgattacagccacacccacctttaacctatata |
55301463 |
T |
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| Q |
213 |
cgcagcaattacaaaagaaattatattacctatgttgggcatgcagttgtgatcttg |
269 |
Q |
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| T |
55301462 |
cgcagcaattacaaaagaaattatattacctatgttgggcatgcagttgtgatcttg |
55301406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 324 - 426
Target Start/End: Complemental strand, 55301351 - 55301249
Alignment:
| Q |
324 |
cgaagcatcatattcttcttaccaatgctttcagctgaagtgctttatctctgttgcagatgaagtctgccaatatcttgggctggtatttggttgccca |
423 |
Q |
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| T |
55301351 |
cgaagcatcatattcttcttaccaatgctttcagctgaagtgctttatctctgttgcagatgaagtctgccaatatcttgggctggtatttggttgccca |
55301252 |
T |
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| Q |
424 |
cag |
426 |
Q |
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| T |
55301251 |
cag |
55301249 |
T |
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