View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6249_low_3 (Length: 379)
Name: NF6249_low_3
Description: NF6249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6249_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 359
Target Start/End: Original strand, 47576878 - 47577205
Alignment:
| Q |
30 |
ttaataaaataagttgacgtaaaaacacgagtctgacaaccttaccttgatctagagcnnnnnnnnnnattcttccttctgattattcgaccctcttatg |
129 |
Q |
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| T |
47576878 |
ttaataaaataagttgacgtaaaaacacgagtctgacaacctt-----gatctagag----tttttttattcttccttctgattattcgaccctcttatg |
47576968 |
T |
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| Q |
130 |
aaccaaaaaatatcattaataaaaccagtnnnnnnn------cataatctttccaccatcattattatccaaaattgaaacttggctgcaacaacag--c |
221 |
Q |
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| T |
47576969 |
aac-aaaaaatatcattaataaaaccagtaaaaaaaaaaaaacataatttttccaccttcattattatccaaaattgaaacttggctgcaacaacagaac |
47577067 |
T |
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| Q |
222 |
agactcattcacacacacaacctcatggtaattaaaaacatacattttccatgcgaaccgaaacaaaccaatcaacttgctccgtacgctacaaaagaaa |
321 |
Q |
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| T |
47577068 |
agactcattcacacacacaacctcatggtaattaaaaacatacattttccatgcgtaccgaaacaaaccaatcaacttgctccgtacgctacaaaagaaa |
47577167 |
T |
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| Q |
322 |
acaaactgaatctcaaactgatataaccggtctctgct |
359 |
Q |
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| T |
47577168 |
acaaactgaatctcaaactgatataaccggtgtctgct |
47577205 |
T |
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