View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6249_low_6 (Length: 339)
Name: NF6249_low_6
Description: NF6249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6249_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 6488729 - 6489054
Alignment:
| Q |
1 |
aacaaccatcctccctcccgacgccaatctcgacttccacgacgtcgaaaaactcttttcgcacgtcccaaccaaaaaacttctcaaatcaactgctgtc |
100 |
Q |
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| T |
6488729 |
aacaaccatcctccctcccgacgccaatctcgacttccacgacgtcgaaaaactcttttcgcacgtcccaaccaaaaaacttctcaaatcaactgctgtc |
6488828 |
T |
|
| Q |
101 |
ctccatgctaccgcggtcgagccaatggttgacctcggtacatggttgttgaggtctgatctcatgcagaccaataatccattaagtaaccttgctatgg |
200 |
Q |
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| T |
6488829 |
ctccatgctaccgcggtcgagccaatggttgacctcggtacatggttgttgaggtctgatctcatgcagaccaataatccattaagtaaccttgctatgg |
6488928 |
T |
|
| Q |
201 |
ctaccacacgtgccacttttttcgattatttttgtgctggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagccggtttacgtgg |
300 |
Q |
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| T |
6488929 |
ctaccacacgtgccacttttttcgatcatttttgtgccggagaagatgctatcaccgctggaaaaagtattgccgggttgaatgaagcaggtttacgtgg |
6489028 |
T |
|
| Q |
301 |
aatgctggtttatggcgttgaagatg |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
6489029 |
aatgctggtttatggcgttgaagatg |
6489054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 6328510 - 6328468
Alignment:
| Q |
228 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtat |
270 |
Q |
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| T |
6328510 |
atttttgtgctggagaagatgctattactgctggaaagagtat |
6328468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 6336068 - 6336026
Alignment:
| Q |
228 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtat |
270 |
Q |
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||||||||||||||||||||||||| || |||||||| ||||| |
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| T |
6336068 |
atttttgtgctggagaagatgctattactgctggaaagagtat |
6336026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 270
Target Start/End: Complemental strand, 6351053 - 6351011
Alignment:
| Q |
228 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtat |
270 |
Q |
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||||||||||||||||||||||||| || |||||||| ||||| |
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| T |
6351053 |
atttttgtgctggagaagatgctattactgctggaaagagtat |
6351011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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