View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6249_low_7 (Length: 262)
Name: NF6249_low_7
Description: NF6249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6249_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 37633920 - 37634153
Alignment:
| Q |
18 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37633920 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttc |
37634019 |
T |
|
| Q |
118 |
ctggctcaccagcgacggcgaagaaagaataaccacccaaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaa |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37634020 |
ctggctcaccagcgacggcaaagaaagaataaccacccaaattgtaagattggaggaccttttcggggttctcgaagatgatctcaatgaaggtacggaa |
37634119 |
T |
|
| Q |
218 |
agtagtttgcatgacattaggtgcgatgatgatg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
37634120 |
agtagtttgcatgacattaggtgcgatggtgatg |
37634153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 37639748 - 37639981
Alignment:
| Q |
18 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639748 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttc |
37639847 |
T |
|
| Q |
118 |
ctggctcaccagcgacggcgaagaaagaataaccacccaaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaa |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37639848 |
ctggctcaccagcgacggcaaagaaagaataaccacccaaattgtaagattggaggaccttttcggggttctcgaagatgatctcaatgaaggtacggaa |
37639947 |
T |
|
| Q |
218 |
agtagtttgcatgacattaggtgcgatgatgatg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
37639948 |
agtagtttgcatgacattaggtgcgatggtgatg |
37639981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 37645122 - 37645355
Alignment:
| Q |
18 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37645122 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgtac |
37645221 |
T |
|
| Q |
118 |
ctggctcaccagcgacggcgaagaaagaataaccacccaaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37645222 |
ctggctcaccagcgacggcgaagaaagaataaccacccaaattgtaagattggaggacctttccggggttctcgaagatgatttcaatgaaggtacggaa |
37645321 |
T |
|
| Q |
218 |
agtagtttgcatgacattaggtgcgatgatgatg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
37645322 |
agtagtttgcatgacattaggtgcgatggtgatg |
37645355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 37648035 - 37648268
Alignment:
| Q |
18 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648035 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttc |
37648134 |
T |
|
| Q |
118 |
ctggctcaccagcgacggcgaagaaagaataaccacccaaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaa |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37648135 |
ctggctcaccagcgacggcaaagaaagaataaccacccaaattgtaagattggaggaccttttcggggttctcgaagatgatctcaatgaaggtacggaa |
37648234 |
T |
|
| Q |
218 |
agtagtttgcatgacattaggtgcgatgatgatg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
37648235 |
agtagtttgcatgacattaggtgcgatggtgatg |
37648268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 37636834 - 37637067
Alignment:
| Q |
18 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37636834 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccagaaggttgtagcccttcctcttctctggggtccatgttc |
37636933 |
T |
|
| Q |
118 |
ctggctcaccagcgacggcgaagaaagaataaccacccaaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaa |
217 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37636934 |
ctggctcaccagcgacggcaaagaaagaataaccacccaaattgtaagattggaggaccttttcggggttctcgaagatgatctcaatgaaggtacggaa |
37637033 |
T |
|
| Q |
218 |
agtagtttgcatgacattaggtgcgatgatgatg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
37637034 |
agtagtttgcatgacattaggtgcgatggtgatg |
37637067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 37650947 - 37651180
Alignment:
| Q |
18 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37650947 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgtac |
37651046 |
T |
|
| Q |
118 |
ctggctcaccagcgacggcgaagaaagaataaccacccaaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaa |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37651047 |
ctggctcaccagcgacgacgaagaaagaataaccacccaaattgtaagattggaggacctttccggggttctcgaagatgatttcaatgaaggtacggaa |
37651146 |
T |
|
| Q |
218 |
agtagtttgcatgacattaggtgcgatgatgatg |
251 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |
|
|
| T |
37651147 |
agtagtttgcatgacattaggtgcaatggtgatg |
37651180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 32387269 - 32387471
Alignment:
| Q |
18 |
aacatgattgcagcccatgatttagggaacacctgaattgtgtgtctgctgatggcatccaaaaggttgtagcccttcctcttctctggggtccatgttc |
117 |
Q |
| |
|
||||| ||||| |||||||| || |||||||| || | |||||| ||||| | |||||||||||||||||| ||| ||||||||||| |||||| | | |
|
|
| T |
32387269 |
aacataattgcggcccatgacttggggaacacttgcactgtgtgcctgctcactgcatccaaaaggttgtagttctttctcttctctggtgtccatttgc |
32387368 |
T |
|
| Q |
118 |
ctggctcaccagcgacggcgaagaaagaataaccacccaaattgtaagattggaggacctttccggggttctcgaagatgatctcaatgaaggtacggaa |
217 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||||| ||||||||||||| |||| ||||||| |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
32387369 |
ctggctcaacagccacggcgaagaaagagtaaccatccaaattgtaagactggatgacctttgtagggttctcgaagatgatctcaacgaaggtgcggaa |
32387468 |
T |
|
| Q |
218 |
agt |
220 |
Q |
| |
|
||| |
|
|
| T |
32387469 |
agt |
32387471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University