View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6250_high_1 (Length: 830)
Name: NF6250_high_1
Description: NF6250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6250_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 10 - 467
Target Start/End: Complemental strand, 2253175 - 2252718
Alignment:
| Q |
10 |
catcatcaaaaccggataattaaaagtaaaacaagcagacataatataaaaccagtcaccaatgtcactctacgaagcattgacacaaacatcagacatg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2253175 |
catcatcaaaaccggataattaaaagtaaaacaagcagacataatataaaaccagtcaccaatgtcactctacgaagcattgacacaaacatcagacatg |
2253076 |
T |
|
| Q |
110 |
acaccgatagctaggcactaaaaatggttttaaaaattaaaagtgcttgtaaggtgtcaatgtcatatcagctttggacatcgacatgtgtcagacactc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2253075 |
acaccgatagctaggcactaaaaatggttttaaaaattaaaagtgcttgtaaggtgtcaatgtcatatcagctttggacatcgacatgtgtcagacactc |
2252976 |
T |
|
| Q |
210 |
aaatacactttcaatctgaagtgtcagttatataacttagatgttagtgtagttcacaacctactcaaaatattataacgacacaactgaagaaaaaact |
309 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2252975 |
aaatacgctttcaatttgaagtgtcagttatataacttagatgttggtgtagttcacaacctactcaaaatattataacgacacaactgaagaaaaaact |
2252876 |
T |
|
| Q |
310 |
tcttcaaagtaaaatgcgcaaacacgagtaacaatttaagcaacagaaaaattcaaacacactaactcaatgagtgacacaaacctgatcaattttattt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2252875 |
tcttcaaagtaaaatgcgcaaacacgagtaacaatttaagcaacagaaaaattcaaacacactaactcaatgagtgacacaaacctgatcaattttattt |
2252776 |
T |
|
| Q |
410 |
tccttcttcaacatagtcaacaagaaaggacctatcaatggagcttcaattaacctca |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2252775 |
tccttcttcaacatagtcaacaagaaaggacctatcaatggagcttcaattaacctca |
2252718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 532 - 814
Target Start/End: Complemental strand, 2252641 - 2252357
Alignment:
| Q |
532 |
gttgaattggagtgaaattggttaacgaaagaagaagcaattaaagttagtggaatgaatgaataaccttgaacaatttcaggttcgtatttgattgaag |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2252641 |
gttgaattggagtgaaattggttaacgaaagaagaagcaattaaagttagtggaatgaatgaataaccttgaacaatttcaggttcgtatttgattgaag |
2252542 |
T |
|
| Q |
632 |
acaaatctacgtccttcgccggcaccattacacgcttcttccccatcttcagaaatcaaaaaga--aaaacgcgcgagcttaactaactgttacagattg |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
2252541 |
acaaatctacgtccttcgccggcaccattacacgcttcttccccatcttcagaaataaaaaaaaataaaacgcgcgagcttaactaactgttacagattg |
2252442 |
T |
|
| Q |
730 |
gaattgttgtagttagcgaaaaaggaagttgaaattggaaatgcaaattgaagagtgtagaagaaacaaacgtagaagtagaaag |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2252441 |
gaattgttgtagttagcgaaaaaggaagttgaaattggaaatgcaaattgaagagagtagaagaaacaaacgtagaagtagaaag |
2252357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University