View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6250_high_2 (Length: 427)
Name: NF6250_high_2
Description: NF6250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6250_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 409
Target Start/End: Complemental strand, 34093675 - 34093296
Alignment:
| Q |
11 |
cagagataaccagaaaaaggtaatgatattagcctgcacctcacttggatcttgagcttctaattatgcttgcctttcaagtcttcctgctctaactgaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34093675 |
cagagataaccagaaaaaggtaatgatattagcctgcacctcacttggatcttgagcttctaattatgcttgcctttcaagtcttcctgctctaactgaa |
34093576 |
T |
|
| Q |
111 |
caaatccttgctagaaattaactagtgatgtgatgtgatgtgatgatgttaatgcaataaatggtagtaaaaatttgaaggatctttgataaaattttca |
210 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34093575 |
caaatccttgct-------------------gatgtgatgtgatgatgttaatgcaataaatggtagtaaaaatttgaaggatctttgataaaattttca |
34093495 |
T |
|
| Q |
211 |
ctctatgattttacatgtcgacatgatggtaatgctgctgcttccattgtggttatctgttagcactggtagt---gacatgtttgccataatgaagtat |
307 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34093494 |
ctctatgattttacttgtcgacatgatggtaatgctgct---tccattgtggttatctgttagcactggtagtagtgacatgtttgccataatgaagtat |
34093398 |
T |
|
| Q |
308 |
tattatattaattaatagcactttcttaatatagggttattgtcttttttccattttctcgtggctcatgaattttagtagaatcaatttttctggtatt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34093397 |
tattatattaattaatagcactttcttaatatagggttattgtcttttttccattttctcgtggctcatgaattttagtagaatcaatttttctggtatt |
34093298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University