View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6250_high_6 (Length: 229)
Name: NF6250_high_6
Description: NF6250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6250_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 46108253 - 46108048
Alignment:
| Q |
6 |
tggagtagcataggaagtgcatgcacgagtccacaacaataagacataaaatattcaacattgtcctcttgtttggacggaggtacctacatatcctaca |
105 |
Q |
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| T |
46108253 |
tggagtaacctaggaagtgcatgcacgagtccacaacaataagacataaaatattcaacattgtcctcttggttggacggaggtacctacatatcctaca |
46108154 |
T |
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| Q |
106 |
tatctgggttgatcacagttataaacaactcagaatgacagtaaacaaacatattgaataatttatttagtttttcagacaaaatagaatggtgtacctc |
205 |
Q |
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| T |
46108153 |
tatctgggttgatcacagttataaacaactcagaatgacagtaaacaaacatattgaatgatttatttagtttttcagacaaaatagaatggtgtacctc |
46108054 |
T |
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| Q |
206 |
aaaaac |
211 |
Q |
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|||||| |
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| T |
46108053 |
aaaaac |
46108048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 46108366 - 46108296
Alignment:
| Q |
132 |
aactcagaatgacagtaaacaaacatattgaataatttatttagtttttcagacaaaatagaatggtgtac |
202 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| |
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| T |
46108366 |
aactcagaatgacagtaaacaaacatattgagtaatttatttagtttttcagagaaattagaatggtgtac |
46108296 |
T |
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