View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6250_low_3 (Length: 410)
Name: NF6250_low_3
Description: NF6250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6250_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 6324113 - 6323737
Alignment:
| Q |
11 |
caaagggtaattgtcggtaatggcaatactatacaacttttgttctcgccttaactcaaaaagtttcatatttcattctcaaatctcaatggtaattgta |
110 |
Q |
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| T |
6324113 |
caaagggtaattgtcggtaatggcaatactatacaacttttgttctcgccttaactcaaaaagtttcatatttcattctcaa-------tggtaattgta |
6324021 |
T |
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| Q |
111 |
acattccaattagcatttcatctcgcaatcctagtttacattatgagttgaagggcaatactatataatttttattgttaatattctaacnnnnnnnnng |
210 |
Q |
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| T |
6324020 |
acattccaattagcatttcatctcgcaatcctagtttacattatgagttgaagggcaatactatataatttttattgttaatattctaactttttttttg |
6323921 |
T |
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| Q |
211 |
gtagtctatttattttaaaatacagaaacattagtgtataatttgtgggggaaaatgacgaagcaacttcatagtttatttttaccacatgcagatataa |
310 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6323920 |
gtagtctatttattataaaatacagaaacattagtgtataatttgtgggggaaaatgacgaagcaacttcatagtttatttttaccacatgcagatataa |
6323821 |
T |
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| Q |
311 |
aaatggaatcaaacatatctcgtaggacgtgacctggaaaatatatgggatcgtgagagaaaggcttagtttaagaatatctac |
394 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6323820 |
aaatggaatcaaacatatatcgtaggacgtgacctggaaaatatatgggatcgtgagagaaaggcttagtttaagaatatctac |
6323737 |
T |
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