View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6250_low_5 (Length: 355)
Name: NF6250_low_5
Description: NF6250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6250_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 25955846 - 25956186
Alignment:
| Q |
1 |
actccactgatcagtagtatggtacattttgttgtttttcattttccaagttttgacatcttcatcatctaacaaaggttttaacctagtttttgagtat |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25955846 |
actccactgatcagtagtagggtacattttgttgtttttcattttccaagttttgacatcttcctcatctaacaaaggttttaacctagtttttgagtat |
25955945 |
T |
|
| Q |
101 |
aaatatccacaaaagagggagggatagttcatagttgtgaacaatgtcaaattagaaaaggggagtaacaaaacacataccaccttcattttttcttatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
25955946 |
aaatatccacaaaagagggagggatagttcatagttgtgaacaatgtcaaattagaaaaggggagtaacaaaacacataccaccttcatttttactttta |
25956045 |
T |
|
| Q |
201 |
agttcatacatattgaatacaagagttagtagccactaatctataactcctacaccccattactatacctcactttttgcacccatagtttcatccctct |
300 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25956046 |
agttcatacatatttaatacaagagttagtagccactaatctataactcctacaccccattactatacctcactttttgcacccatagtttcatccctct |
25956145 |
T |
|
| Q |
301 |
catctatactccaaaatcactcatgtcaaataacatcatct |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
25956146 |
catctatactccaaaatcactcatgtcaaataacatcatct |
25956186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 39776723 - 39776677
Alignment:
| Q |
59 |
tcttcatcatctaacaaaggttttaacctagtttttgagtataaata |
105 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||||||||||||||| |
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|
| T |
39776723 |
tcttcatcattcaacaaggattttaacctagtttttgagtataaata |
39776677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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