View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6250_low_6 (Length: 354)
Name: NF6250_low_6
Description: NF6250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6250_low_6 |
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| [»] scaffold0471 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 24127095 - 24126947
Alignment:
| Q |
1 |
ttcggatccaatcaacaacaacaatacacaaacaactcattttcggatcgaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttagg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24127095 |
ttcggatccaatcaacaacaacaacacacaaacaactcatttttggatcgaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttagg |
24126996 |
T |
|
| Q |
101 |
ttagaattgggaatcaaacaacccattttatagttatgaacagtacaag |
149 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
24126995 |
ttagaattgggaatcaaacaacccattttctaagtatgaacagtacaag |
24126947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 24686024 - 24685912
Alignment:
| Q |
1 |
ttcggatccaatcaacaacaacaatacacaaacaactcattttcggatcgaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttagg |
100 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24686024 |
ttcggatccaatcaacaacaacaacacacaaacaattcattttcggatcgaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttagg |
24685925 |
T |
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| Q |
101 |
ttagaattgggaa |
113 |
Q |
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||||||||||||| |
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| T |
24685924 |
ttagaattgggaa |
24685912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0471 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0471
Description:
Target: scaffold0471; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 11699 - 11550
Alignment:
| Q |
1 |
ttcggatccaatcaacaacaacaatacacaaacaactcattttcggatcgaatcaatcataaacaataaaaa-tggaatcaaatcaaacaacaaatttag |
99 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11699 |
ttcggatccaatcaacaacaacaacacacaaacaactcatttttggatcgaatcaatcataaacaataaaaaatggaatcaaatcaaacaacaaatttag |
11600 |
T |
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| Q |
100 |
gttagaattgggaatcaaacaacccattttatagttatgaacagtacaag |
149 |
Q |
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|||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
11599 |
gttagaattgggaatcaaacaacccattttctaagtatgaacagtacaag |
11550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 9306166 - 9306313
Alignment:
| Q |
1 |
ttcggatccaatcaacaacaacaatacacaaacaactcattttcggatcgaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttagg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9306166 |
ttcggatccaatcaacaacaacaacacacaaacaactcatttttggatcgaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttagg |
9306265 |
T |
|
| Q |
101 |
ttagaattgggaatcaaacaacccattttatagttatgaacagtacaag |
149 |
Q |
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||| ||||||||||||||||||||||||| ||| ||| ||||||||||| |
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| T |
9306266 |
ttaaaattgggaatcaaacaacccattttctaggtat-aacagtacaag |
9306313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 25649144 - 25649291
Alignment:
| Q |
1 |
ttcggatccaatcaacaacaacaatacacaaacaactcattttcggatcgaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttagg |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25649144 |
ttcggatccaatcaataacaacaacacacaaacaactcattttcggatcgaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttagg |
25649243 |
T |
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| Q |
101 |
ttagaattgggaatcaaacaacccattttatagttatgaacagtacaag |
149 |
Q |
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||||||||||||||| || |||||||||| ||| ||||||||||||||| |
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| T |
25649244 |
ttagaattgggaatc-aataacccattttctaggtatgaacagtacaag |
25649291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 18750803 - 18750768
Alignment:
| Q |
13 |
caacaacaacaatacacaaacaactcattttcggat |
48 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
18750803 |
caacaacaacaatacacaaacaactcattttcggat |
18750768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 18750915 - 18750880
Alignment:
| Q |
13 |
caacaacaacaatacacaaacaactcattttcggat |
48 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
18750915 |
caacaacaacaatacacaaacaactcattttcggat |
18750880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 49383552 - 49383664
Alignment:
| Q |
1 |
ttcggatccaatcaacaacaacaatacacaaacaactcattttcggatcgaatcaatcataaacaataaaaatggaatcaaatcaaacaacaaatttagg |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| | ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49383552 |
ttcggatccaatcaaaaacaacaacacacaaacaaattattttcggatcaaatcaatcataaacaatacaaatggaatcaaatcaaacaacaaatttagg |
49383651 |
T |
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| Q |
101 |
ttagaattgggaa |
113 |
Q |
| |
|
||||||||||||| |
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| T |
49383652 |
ttagaattgggaa |
49383664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 19627498 - 19627455
Alignment:
| Q |
13 |
caacaacaacaatacacaaacaactcattttcggatcgaatcaa |
56 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
19627498 |
caacaacaacaacacacaaacaacccattttcggatcgaatcaa |
19627455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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