View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6251_low_1 (Length: 353)
Name: NF6251_low_1
Description: NF6251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6251_low_1 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 11468710 - 11469041
Alignment:
| Q |
17 |
acttataaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccatttgttttatagat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11468710 |
acttataaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttcactgccattgctcttgaaatccatttgttttatagat |
11468809 |
T |
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| Q |
117 |
taagctttggtgatgtcttatgtgtgtgttgttttgatgaatataatgtagtatatgaagtatgtataaacaagtttgcaacttatatatacatttcaaa |
216 |
Q |
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| T |
11468810 |
taagctttggtgatgtcttatgtgtgtgttgttttgatgaatataatgtagtatatgaagtatgtataaacaagtttgcaacttatatatacatttcaaa |
11468909 |
T |
|
| Q |
217 |
atccaggacaaagaacagatattgcctaattttatgtctttgttttgaggtctcaattaacacgaggtgaactcttgaagcattattacttnnnnnnnnt |
316 |
Q |
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| T |
11468910 |
atccaggacacagaacagatattgccttattttatgtc-ttgttttgaggtctcaattaacacgaggtgaactcttgaagcattattactt--aaaaaat |
11469006 |
T |
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| Q |
317 |
taaaactgtgtagagacattaggcacatgccctta |
351 |
Q |
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| T |
11469007 |
taaaactgtgtagagacattaggcacatgccctta |
11469041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 11522751 - 11522420
Alignment:
| Q |
17 |
acttataaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccatttgttttatagat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11522751 |
acttataaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttcactgccattgctcttgaaatccatttgttttatagat |
11522652 |
T |
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| Q |
117 |
taagctttggtgatgtcttatgtgtgtgttgttttgatgaatataatgtagtatatgaagtatgtataaacaagtttgcaacttatatatacatttcaaa |
216 |
Q |
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| T |
11522651 |
taagctttggtgatgtcttatgtgtgtgttgttttgatgaatataatgtagtatatgaagtatgtataaacaagtttgcaacttatatatacatttcaaa |
11522552 |
T |
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| Q |
217 |
atccaggacaaagaacagatattgcctaattttatgtctttgttttgaggtctcaattaacacgaggtgaactcttgaagcattattacttnnnnnnnnt |
316 |
Q |
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| T |
11522551 |
atccaggacacagaacagatattgccttattttatgtc-ttgttttgaggtctcaattaacacgaggtgaactcttgaagcattattactt--aaaaaat |
11522455 |
T |
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| Q |
317 |
taaaactgtgtagagacattaggcacatgccctta |
351 |
Q |
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| T |
11522454 |
taaaactgtgtagagacattaggcacatgccctta |
11522420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 11445740 - 11445826
Alignment:
| Q |
19 |
ttataaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccattt |
105 |
Q |
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| T |
11445740 |
ttataaagctgtatatatgtttgtacagatggatttgagcatgatatagctgactttcttcactgccattgctactggaatccattt |
11445826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 11507119 - 11507033
Alignment:
| Q |
19 |
ttataaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccattt |
105 |
Q |
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| T |
11507119 |
ttataaagccgtatatatgtttgtacagatggatttgagcgtgatacagttgattttcttcactgccattgctactgaaatccattt |
11507033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 11547350 - 11547264
Alignment:
| Q |
19 |
ttataaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccattt |
105 |
Q |
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||||||||||||||| ||||||||| | |||||||||||||||||| | |||| |||||||||| |||||||| || ||||||||| |
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| T |
11547350 |
ttataaagctgtatatatgtttgtacagatggatttgagcatgataaaactgactttcttcactgccattgctactggaatccattt |
11547264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 34775706 - 34775649
Alignment:
| Q |
23 |
aaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttca |
80 |
Q |
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| T |
34775706 |
aaagttgtatacatgtttgtacaaatggatttgagcatgatacagttcactttcttca |
34775649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 34783927 - 34783870
Alignment:
| Q |
23 |
aaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttca |
80 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||| | | |||||||| |
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| T |
34783927 |
aaagttgtatacatgtttgtacaaatggatttgagcatgatacagttcactttcttca |
34783870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 1776 - 1690
Alignment:
| Q |
19 |
ttataaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccattt |
105 |
Q |
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| T |
1776 |
ttataaagccgtatatatgtttgtacagatggatttgagcgtgatacagttgattttcttcactgccattgctactgaaatccattt |
1690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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