View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6253_high_2 (Length: 529)

Name: NF6253_high_2
Description: NF6253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6253_high_2
NF6253_high_2
[»] chr1 (12 HSPs)
chr1 (18-519)||(31766665-31767163)
chr1 (195-242)||(31768279-31768326)
chr1 (95-165)||(34364618-34364688)
chr1 (23-88)||(34649600-34649665)
chr1 (20-88)||(66403-66472)
chr1 (112-165)||(44290435-44290488)
chr1 (34-88)||(34364679-34364734)
chr1 (93-156)||(41142482-41142545)
chr1 (18-88)||(50051955-50052026)
chr1 (96-165)||(40082518-40082588)
chr1 (95-152)||(3875321-3875378)
chr1 (29-81)||(9956076-9956129)
[»] scaffold0391 (2 HSPs)
scaffold0391 (95-165)||(1083-1153)
scaffold0391 (18-87)||(1616-1685)
[»] chr4 (16 HSPs)
chr4 (109-165)||(18879931-18879987)
chr4 (25-71)||(6876048-6876094)
chr4 (27-88)||(49076762-49076823)
chr4 (107-165)||(54936318-54936376)
chr4 (39-88)||(2740868-2740917)
chr4 (22-86)||(22028299-22028364)
chr4 (28-72)||(11783499-11783543)
chr4 (18-82)||(44620815-44620879)
chr4 (93-152)||(39404127-39404186)
chr4 (95-166)||(54342983-54343053)
chr4 (95-165)||(16889511-16889581)
chr4 (95-165)||(25483447-25483517)
chr4 (95-165)||(41370468-41370538)
chr4 (95-152)||(39792848-39792905)
chr4 (95-148)||(43827550-43827603)
chr4 (109-165)||(23817431-23817486)
[»] chr6 (8 HSPs)
chr6 (18-88)||(2579804-2579875)
chr6 (95-166)||(16108162-16108234)
chr6 (93-138)||(1127469-1127514)
chr6 (95-140)||(2579494-2579539)
chr6 (93-165)||(16454684-16454756)
chr6 (18-88)||(2578766-2578837)
chr6 (18-88)||(2579041-2579112)
chr6 (18-82)||(16454731-16454796)
[»] chr8 (16 HSPs)
chr8 (107-165)||(9309477-9309535)
chr8 (95-165)||(43274612-43274682)
chr8 (107-163)||(9309104-9309160)
chr8 (95-139)||(30359720-30359764)
chr8 (18-88)||(18371925-18371995)
chr8 (34-88)||(34835047-34835101)
chr8 (96-165)||(3038265-3038336)
chr8 (18-82)||(8919083-8919147)
chr8 (93-165)||(3037944-3038018)
chr8 (18-88)||(18372215-18372285)
chr8 (95-164)||(3669798-3669867)
chr8 (95-136)||(6732006-6732047)
chr8 (109-162)||(6876842-6876895)
chr8 (95-158)||(1014228-1014292)
chr8 (93-153)||(40518180-40518240)
chr8 (34-82)||(40518244-40518292)
[»] chr3 (8 HSPs)
chr3 (95-165)||(54017793-54017863)
chr3 (28-88)||(3135034-3135094)
chr3 (93-166)||(42342066-42342139)
chr3 (34-93)||(22304367-22304427)
chr3 (93-165)||(29644558-29644630)
chr3 (95-134)||(45901825-45901864)
chr3 (28-56)||(15773020-15773048)
chr3 (28-88)||(37990908-37990968)
[»] chr2 (7 HSPs)
chr2 (93-165)||(42514758-42514830)
chr2 (95-165)||(3673179-3673249)
chr2 (18-79)||(42514805-42514866)
chr2 (18-78)||(6421541-6421601)
chr2 (98-134)||(43443063-43443099)
chr2 (95-165)||(40163349-40163419)
chr2 (37-82)||(36785883-36785928)
[»] chr5 (9 HSPs)
chr5 (95-165)||(624307-624378)
chr5 (93-140)||(26590912-26590959)
chr5 (38-88)||(26075090-26075140)
chr5 (98-164)||(32487507-32487573)
chr5 (94-152)||(38427657-38427715)
chr5 (34-82)||(13416079-13416127)
chr5 (93-165)||(34753003-34753074)
chr5 (34-82)||(35150515-35150563)
chr5 (98-165)||(42405574-42405642)
[»] chr7 (7 HSPs)
chr7 (95-163)||(30244381-30244449)
chr7 (33-88)||(45754885-45754940)
chr7 (93-134)||(1085624-1085665)
chr7 (18-63)||(30253726-30253771)
chr7 (35-88)||(40094699-40094752)
chr7 (18-63)||(47129250-47129295)
chr7 (109-165)||(30245198-30245254)


Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Complemental strand, 31767163 - 31766665
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcctgtcgcgtctctcttacttatgtggttgt 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||| |||||||||||||||| ||||||    
T  31767163 ccccaagcttccctcatgacccaacagtggtatcagagccccgttcgacgaagggtacgaccgaggcagcctgtcgtgtctctcttacttatgcggttgt 31767064  T
Q  118 tctaacttcgatgtggatggttctccgagctcccccagtgacccaacacatttagccataataactaagttttatagtcattactcattacggactagca 217  Q
    |||||||||||||||||| || |||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31767063 tctaacttcgatgtggatagtcctccgaactcccca--tgacccaacacatttagccataataactaagttttatagtcattactcattacggactagca 31766966  T
Q  218 attatcaatcatacacatttgctcaaactttactccgaaagttagcacaacnnnnnnnnaccgaaaacattttcctcttgaaaacgtggcgtataaagga 317  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||    
T  31766965 attatcaatcatacacatttgcccaaactttactccgaaagttagcacaacttttttttaccgaaa-cattttcctcttgaaaacgtggcgtataaagga 31766867  T
Q  318 actgttgcaacaagaagaaattatatattgacggattaaagagggaaagaatataaaggcatgcccatggagtggtacccttgaaggaacataaaacagt 417  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31766866 actgttgcaacaagaagaaattatatattgacggattatagagggaaagaatataaaggcatgcacatggagtggtacccttgaaggaacataaaacagt 31766767  T
Q  418 tgttggaaatgtatggcccactatcatgtccttagcaaataatcatgtttgaacatcacaacatgataagaattaaaggattcgatgagctttctgcctt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31766766 tgttggaaatgtatggcccactatcatgtccttagcaaataatcatgtttgaacatcacaacatgataagaattaaaggattcgatgagctttctgcttt 31766667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 31768326 - 31768279
Alignment:
Q  195 tcattactcattacggactagcaattatcaatcatacacatttgctca 242  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||    
T  31768326 tcattactcattacggactagcaattatcaatcatacatatatgctca 31768279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 34364618 - 34364688
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||  |||||| ||||| |||| | |||||||||||||||| | ||||||||||||||||||||||    
T  34364618 gtctctctcgcttatgcggttgctctagcctcgatgtggatggttccctgagctcccccagtgacccaaca 34364688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 34649600 - 34649665
Alignment:
Q  23 agcttccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcc 88  Q
    |||||||||  ||||||||||||||||||||||| |||||| | |||||| ||||||||| |||||    
T  34649600 agcttccctagtgacccaacagtggtatcagagccccgttcgatgaagggtacgaccgaggcagcc 34649665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 66472 - 66403
Alignment:
Q  20 ccaagcttccctcatgacccaacagtggtatcagag-ctccgttcaacgaagggcacgaccgagacagcc 88  Q
    ||||||| ||||||||||||||||||| |||||||| | | |||| |||||||| ||||||||| |||||    
T  66472 ccaagctcccctcatgacccaacagtgatatcagagtcccggttcgacgaagggtacgaccgaggcagcc 66403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 44290488 - 44290435
Alignment:
Q  112 ggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    |||||||||| | |||||||||| ||| | ||||||||||||||||||||||||    
T  44290488 ggttgttctagcctcgatgtggacggtcccccgagctcccccagtgacccaaca 44290435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 34364679 - 34364734
Alignment:
Q  34 tgacccaacagtggtatcagagctcc-gttcaacgaagggcacgaccgagacagcc 88  Q
    ||||||||||||||||||||||| || |||| |||||||| |||||| ||||||||    
T  34364679 tgacccaacagtggtatcagagccccggttcgacgaagggtacgacccagacagcc 34364734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 41142482 - 41142545
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagt 156  Q
    ||||||||||| ||| ||||||||||||| | |||||||||| ||| | ||||| |||||||||    
T  41142482 gcgtctctcttgcttgtgtggttgttctagcctcgatgtggacggtcccccgagttcccccagt 41142545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 50052026 - 50051955
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctcc-gttcaacgaagggcacgaccgagacagcc 88  Q
    |||| |||| ||||| ||||||||||||||||||||||| || |||| || |||||| |||||||| |||||    
T  50052026 ccccgagctcccctcgtgacccaacagtggtatcagagccccggttcgacaaagggcgcgaccgaggcagcc 50051955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 40082518 - 40082588
Alignment:
Q  96 tctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagct-cccccagtgacccaaca 165  Q
    |||||||| ||| || | |||||||| | ||||||||||| || ||||||||| |||||||||||||||||    
T  40082518 tctctcttgcttgtgcgtttgttctagcctcgatgtggatagtcctccgagctccccccagtgacccaaca 40082588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 3875378 - 3875321
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccc 152  Q
    |||||||| |||  ||||||||||||| | |||||||||| ||| |||||||||||||    
T  3875378 gtctctctcactagtgtggttgttctagcctcgatgtggacggtcctccgagctcccc 3875321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 9956076 - 9956129
Alignment:
Q  29 cctcatgacccaacagtggtatcagag-ctccgttcaacgaagggcacgaccga 81  Q
    |||| |||||||||||||||||||||| ||| |||| |||||||| ||||||||    
T  9956076 cctcgtgacccaacagtggtatcagagcctcggttcgacgaagggtacgaccga 9956129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 1153 - 1083
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    |||||||||  |||||||||||||||| | |||||||||| ||||| || |||||||||||||||||||||    
T  1153 gtctctcttgtttatgtggttgttctagcctcgatgtggacggttccccaagctcccccagtgacccaaca 1083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 1685 - 1616
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagc 87  Q
    |||| |||| ||||| |||||||||||||||||||||||  ||||| || ||||| || |||||| ||||    
T  1685 cccctagctcccctcgtgacccaacagtggtatcagagcctcgttcgacaaagggtacaaccgaggcagc 1616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 18879931 - 18879987
Alignment:
Q  109 tgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||    
T  18879931 tgtggttgttctagcttcgatgtggacggtcctccgagctcccccaatgacccaaca 18879987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 6876094 - 6876048
Alignment:
Q  25 cttccctcatgacccaacagtggtatcagagctccgttcaacgaagg 71  Q
    |||||||||||||||||||||||||||||||| || |||||||||||    
T  6876094 cttccctcatgacccaacagtggtatcagagcccccttcaacgaagg 6876048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 49076823 - 49076762
Alignment:
Q  27 tccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcc 88  Q
    |||||||||||||||||||||||||||||| |||||| || ||||| || |||||| |||||    
T  49076823 tccctcatgacccaacagtggtatcagagccccgttcgacaaagggtactaccgaggcagcc 49076762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 54936318 - 54936376
Alignment:
Q  107 tatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||||||||| | ||||||||||  || | ||||||||||||||||||||||||    
T  54936318 tatgtggttgttctagcctcgatgtggacagtcccccgagctcccccagtgacccaaca 54936376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 2740868 - 2740917
Alignment:
Q  39 caacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcc 88  Q
    |||||||||||||||||| |||||| |||||||| ||||||||| |||||    
T  2740868 caacagtggtatcagagccccgttcgacgaagggtacgaccgaggcagcc 2740917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 22028364 - 22028299
Alignment:
Q  22 aagcttccctca-tgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacag 86  Q
    ||||| |||||| |||||||||||||||||| |||| |||||| |||||||| | |||||||||||    
T  22028364 aagctcccctcactgacccaacagtggtatcggagccccgttcgacgaagggtatgaccgagacag 22028299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 11783543 - 11783499
Alignment:
Q  28 ccctcatgacccaacagtggtatcagagctccgttcaacgaaggg 72  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||    
T  11783543 ccctcatgacccaacagtggtatcaaagctcggttccacgaaggg 11783499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 44620815 - 44620879
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgag 82  Q
    ||||||||| ||||||||| |||| |||||||||||||| ||||||  | ||||| |||||||||    
T  44620815 ccccaagctcccctcatgatccaatagtggtatcagagccccgttcgtcaaagggtacgaccgag 44620879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 39404127 - 39404186
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccc 152  Q
    ||||||||||| ||| ||||||||||||| | |||||||||| ||| | |||||||||||    
T  39404127 gcgtctctcttgcttgtgtggttgttctagcctcgatgtggacggtcccccgagctcccc 39404186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 54343053 - 54342983
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaacac 166  Q
    ||||||||| |||  |||||||||||| | |||||||||||||| | |||||||  ||||||||||||||||    
T  54343053 gtctctcttgcttgagtggttgttctagcctcgatgtggatggtcccccgagct-tcccagtgacccaacac 54342983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 16889581 - 16889511
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||| ||| |||| |||||||||| |||||||||| ||| |  ||||||||||  |||||||||||    
T  16889581 gtctctcttccttgtgtgattgttctaacctcgatgtggacggtccctcgagctccccacgtgacccaaca 16889511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 25483447 - 25483517
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||| ||| ||||||||||||| | |||||||||| |||   ||  ||||||||||||||||||||    
T  25483447 gtctctcttgcttgtgtggttgttctagcctcgatgtggacggtctccctggctcccccagtgacccaaca 25483517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 41370468 - 41370538
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||| |||  |||||||||||| | |||||||||| ||| | |||| || ||||||||||||||||    
T  41370468 gtctctcttgcttgagtggttgttctagcctcgatgtggacggtcccccgaacttccccagtgacccaaca 41370538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 39792905 - 39792848
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccc 152  Q
    ||||||||| ||| ||||||||||||| | |||||||||| ||| ||| |||||||||    
T  39792905 gtctctcttgcttgtgtggttgttctagcctcgatgtggacggtcctctgagctcccc 39792848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 43827550 - 43827603
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagct 148  Q
    ||||||||||||| || |||||||||||| |||||||||| ||| | |||||||    
T  43827550 gtctctcttacttgtgcggttgttctaacctcgatgtggacggtcccccgagct 43827603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 23817486 - 23817431
Alignment:
Q  109 tgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||||||| | |||||||||| ||||| | | ||||||||||||||||||||    
T  23817486 tgtggttgttctagcctcgatgtggacggttcccag-gctcccccagtgacccaaca 23817431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 2579875 - 2579804
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctcc-gttcaacgaagggcacgaccgagacagcc 88  Q
    ||||||||| ||||||| ||||||||||||||||||||| || |||| |||||||| ||||||||| |||||    
T  2579875 ccccaagctcccctcattacccaacagtggtatcagagccccggttccacgaagggtacgaccgaggcagcc 2579804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 16108162 - 16108234
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttc-tccgagctcccccagtgacccaacac 166  Q
    ||||||||| ||| || ||||||| |||| |||||||||| ||| | ||||||||||||||||||||||||||    
T  16108162 gtctctcttgcttgtggggttgttataacctcgatgtggacggtccctccgagctcccccagtgacccaacac 16108234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 1127469 - 1127514
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtggatggt 138  Q
    |||||||||||||||||||||||| |||||| ||||||||| ||||    
T  1127469 gcgtctctcttacttatgtggttgctctaacctcgatgtgggtggt 1127514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 2579539 - 2579494
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttc 140  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  2579539 gtctctcttgcttgtgtggttgttctaacctcgatgtggatggttc 2579494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 16454684 - 16454756
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||||| ||| || |||||||||| | |||||||||| ||| | |||||||||||  |||||||||||    
T  16454684 gcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtcccccgagctcccctcgtgacccaaca 16454756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 2578837 - 2578766
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctcc-gttcaacgaagggcacgaccgagacagcc 88  Q
    ||||| ||| |||||||||  |||||||||||||||||| || |||| |||||||| ||||||||| |||||    
T  2578837 ccccaggctcccctcatgaatcaacagtggtatcagagccccggttcgacgaagggtacgaccgaggcagcc 2578766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 2579112 - 2579041
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagag-ctccgttcaacgaagggcacgaccgagacagcc 88  Q
    |||| |||| ||||||||||||||||||| |||||||| | | |||| |||||||| ||||||||| |||||    
T  2579112 ccccgagctcccctcatgacccaacagtgatatcagagtcccggttcgacgaagggtacgaccgaggcagcc 2579041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 16454731 - 16454796
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctc-cgttcaacgaagggcacgaccgag 82  Q
    |||| |||| ||||| ||||||||||||||||||||||| |  |||| |||||||| |||||||||    
T  16454731 ccccgagctcccctcgtgacccaacagtggtatcagagcccaggttcgacgaagggtacgaccgag 16454796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 9309477 - 9309535
Alignment:
Q  107 tatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||||||||| | |||||||||| ||| | ||||||||||||||||||||||||    
T  9309477 tatgtggttgttctagcctcgatgtggacggtcccccgagctcccccagtgacccaaca 9309535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 43274682 - 43274612
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    |||||||||||||||| |||||||| | | |||||||||| ||| | |||||||||| |||||||||||||    
T  43274682 gtctctcttacttatggggttgttccagcctcgatgtggacggtcccccgagctcccacagtgacccaaca 43274612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 9309104 - 9309160
Alignment:
Q  107 tatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaa 163  Q
    ||||||||||||||| | |||||||||| ||| | ||||||||||||||||||||||    
T  9309104 tatgtggttgttctagcctcgatgtggacggtcccccgagctcccccagtgacccaa 9309160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 30359720 - 30359764
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggtt 139  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||    
T  30359720 gtctctcttacttatgcggttgttctaacttcgatgtggacggtt 30359764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 18371995 - 18371925
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcc 88  Q
    |||| |||| |||||||||||||||||||||||||||||   |||| || ||||| ||||||||| |||||    
T  18371995 ccccgagctcccctcatgacccaacagtggtatcagagcctggttcgacaaagggtacgaccgaggcagcc 18371925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 34835047 - 34835101
Alignment:
Q  34 tgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcc 88  Q
    ||||||||||||||||||||||| | |||| |||||||| ||||||||| |||||    
T  34835047 tgacccaacagtggtatcagagcccggttcgacgaagggtacgaccgaggcagcc 34835101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 3038336 - 3038265
Alignment:
Q  96 tctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcc--cccagtgacccaaca 165  Q
    |||||||| ||| ||||||||||||| | |||||||||| ||| |||||||||||  | |||||||||||||    
T  3038336 tctctcttgcttgtgtggttgttctagcctcgatgtggacggtcctccgagctccctctcagtgacccaaca 3038265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 8919147 - 8919083
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgag 82  Q
    |||| |||||||||| |||| ||||| |||||||||||  ||||||||||||||| | |||||||    
T  8919147 cccccagcttccctcgtgactcaacaatggtatcagagtcccgttcaacgaagggtatgaccgag 8919083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 3038018 - 3037944
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccc--cagtgacccaaca 165  Q
    ||||||||||  ||| ||||||||||||| | |||||||||| ||| | |||||||||||  |||||||||||||    
T  3038018 gcgtctctctatcttgtgtggttgttctagcctcgatgtggacggtcccccgagctccccctcagtgacccaaca 3037944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 18372285 - 18372215
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcc 88  Q
    |||| |||| |||||||||||||| ||||||||||||||   |||| || ||||| ||||||||| |||||    
T  18372285 ccccgagctcccctcatgacccaatagtggtatcagagcctggttcgacaaagggtacgaccgaggcagcc 18372215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 3669798 - 3669867
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaac 164  Q
    ||||||||| ||| || |||||||||| | |||||||||||||| | || ||||||||  ||||||||||    
T  3669798 gtctctcttgcttgtgcggttgttctagcctcgatgtggatggtccccctagctcccctcgtgacccaac 3669867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 6732006 - 6732047
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatg 136  Q
    ||||||||| |||||| |||||||||||| ||||||||||||    
T  6732006 gtctctcttgcttatgcggttgttctaacctcgatgtggatg 6732047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 6876895 - 6876842
Alignment:
Q  109 tgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgaccca 162  Q
    ||||||||||||| | |||||||||| ||| | ||||||||||||| |||||||    
T  6876895 tgtggttgttctagcctcgatgtggacggtcccccgagctcccccaatgaccca 6876842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 1014292 - 1014228
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggtt-ctccgagctcccccagtga 158  Q
    ||||||| | ||| || |||||||||| | ||||||||||||||| | |||||||||||||||||    
T  1014292 gtctctcctgcttgtgcggttgttctagcctcgatgtggatggttcccccgagctcccccagtga 1014228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 40518180 - 40518240
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctccccc 153  Q
    ||||||||||| ||| ||||||||||||| | | |||||||| ||| | ||||||||||||    
T  40518180 gcgtctctcttgcttgtgtggttgttctagccttgatgtggacggtcccccgagctccccc 40518240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 40518244 - 40518292
Alignment:
Q  34 tgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgag 82  Q
    ||||| |||| |||||||||||| |||||| |||||||| |||||||||    
T  40518244 tgaccaaacaatggtatcagagccccgttcgacgaagggtacgaccgag 40518292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 54017863 - 54017793
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||||||| ||||||||||||| |||||||||||  ||| | ||  ||||||||||||||||||||    
T  54017863 gtctctcttacttgtgtggttgttctagcttcgatgtgggcggtccccctggctcccccagtgacccaaca 54017793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 3135094 - 3135034
Alignment:
Q  28 ccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcc 88  Q
    |||||||||||||| |||||||||||||| |||||| || ||||| ||||||||| |||||    
T  3135094 ccctcatgacccaatagtggtatcagagcaccgttcgacaaagggtacgaccgaggcagcc 3135034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 42342139 - 42342066
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaacac 166  Q
    ||||||||||| ||| || |||||||||| | |||||||||| ||| |||||| ||||| | ||||||||||||    
T  42342139 gcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtcctccgaactccctcggtgacccaacac 42342066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 22304367 - 22304427
Alignment:
Q  34 tgacccaacagtggtatcagagctcc-gttcaacgaagggcacgaccgagacagcctgtcg 93  Q
    ||||||||||||||||||||||| || |||| |||||||| ||||||||| ||||| ||||    
T  22304367 tgacccaacagtggtatcagagccccggttcgacgaagggtacgaccgaggcagccggtcg 22304427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 29644630 - 29644558
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||||| |||||| ||||||| || |||||||||||||||| | || | ||||||  |||||||||||    
T  29644630 gcgtctctcttgcttatgcggttgttttagcttcgatgtggatggtcccccaaactcccctcgtgacccaaca 29644558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 45901825 - 45901864
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtgga 134  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  45901825 gtctctcttacttatagggttgttctaacttcgatgtgga 45901864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 15773020 - 15773048
Alignment:
Q  28 ccctcatgacccaacagtggtatcagagc 56  Q
    |||||||||||||||||||||||||||||    
T  15773020 ccctcatgacccaacagtggtatcagagc 15773048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 37990968 - 37990908
Alignment:
Q  28 ccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcc 88  Q
    |||||||||||||||||||||||||| || || ||| || ||||| |||| |||| |||||    
T  37990968 ccctcatgacccaacagtggtatcagggccccattcgacaaagggtacgatcgaggcagcc 37990908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 42514758 - 42514830
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||||||||| || |||||||||| | |||||||||| ||| | |||||||||||  |||||||||||    
T  42514758 gcgtctctcttacttgtggggttgttctagcctcgatgtggacggtcccccgagctcccctcgtgacccaaca 42514830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 3673179 - 3673249
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||||||  ||||||||||||| | |||||||||| ||| | ||  ||||||||||||||||||||    
T  3673179 gtctctcttactagtgtggttgttctagcctcgatgtggacggtccccctggctcccccagtgacccaaca 3673249  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 42514805 - 42514866
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgacc 79  Q
    |||| |||| ||||| ||||||||||||||||||||||| | |||| |||||||| ||||||    
T  42514805 ccccgagctcccctcgtgacccaacagtggtatcagagccctgttcgacgaagggtacgacc 42514866  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 6421541 - 6421601
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctccgttcaacgaagggcacgac 78  Q
    |||| |||| ||||| ||||||||||||||||||||||| |||||| || ||||| |||||    
T  6421541 ccccgagctcccctcgtgacccaacagtggtatcagagcaccgttcgacaaagggtacgac 6421601  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 43443099 - 43443063
Alignment:
Q  98 tctcttacttatgtggttgttctaacttcgatgtgga 134  Q
    ||||||||||||||| |||||||||||||||||||||    
T  43443099 tctcttacttatgtgattgttctaacttcgatgtgga 43443063  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 40163419 - 40163349
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctcc-gagctcccccagtgacccaaca 165  Q
    ||||||||| ||| ||||||||||||||| ||||||| ||||| ||||| ||||||||||  ||||||||||    
T  40163419 gtctctcttgcttgtgtggttgttctaacctcgatgtagatgg-tctcctgagctccccctatgacccaaca 40163349  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 36785928 - 36785883
Alignment:
Q  37 cccaacagtggtatcagagctccgttcaacgaagggcacgaccgag 82  Q
    |||||||||||||||||||| |||||| |||||||| |||| ||||    
T  36785928 cccaacagtggtatcagagccccgttcgacgaagggtacgatcgag 36785883  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 624307 - 624378
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctccccc-agtgacccaaca 165  Q
    |||||||| |||| || |||||||||| | |||||||||| ||||| |||||||||||| ||||||||||||    
T  624307 gtctctctcacttgtggggttgttctagcctcgatgtggacggttccccgagctccccctagtgacccaaca 624378  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 26590959 - 26590912
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtggatggttc 140  Q
    |||||||||| |||  ||||||||||||||| ||||||||||||||||    
T  26590959 gcgtctctctcactagtgtggttgttctaacctcgatgtggatggttc 26590912  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 26075140 - 26075090
Alignment:
Q  38 ccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcc 88  Q
    |||||||||||||||||||  ||||| |||||||| ||||||||| |||||    
T  26075140 ccaacagtggtatcagagcctcgttcgacgaagggtacgaccgaggcagcc 26075090  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 32487507 - 32487573
Alignment:
Q  98 tctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaac 164  Q
    |||||| ||||||||||||||||| | |||||||||||||| | || |||| ||||  |||||||||    
T  32487507 tctcttgcttatgtggttgttctagcctcgatgtggatggtcccccaagcttcccccatgacccaac 32487573  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 38427657 - 38427715
Alignment:
Q  94 cgtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccc 152  Q
    ||||||||| |||| || |||||||||||| |||||||||||| |  ||||||||||||    
T  38427657 cgtctctctcacttgtgcggttgttctaacctcgatgtggatgatcttccgagctcccc 38427715  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 13416127 - 13416079
Alignment:
Q  34 tgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgag 82  Q
    ||||||||||||||||||||||  ||||||  ||||||| |||||||||    
T  13416127 tgacccaacagtggtatcagagtcccgttcgtcgaagggtacgaccgag 13416079  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 34753074 - 34753003
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||||| ||| || |||||||||| | |||||||||| ||||  || |||||||||| ||||||||||    
T  34753074 gcgtctctcttgcttgtgcggttgttctagcctcgatgtggacggtttcccaagctccccca-tgacccaaca 34753003  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 35150515 - 35150563
Alignment:
Q  34 tgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgag 82  Q
    ||||||||||||||||||||||| |||||  |||||||| | |||||||    
T  35150515 tgacccaacagtggtatcagagccccgtttgacgaagggtatgaccgag 35150563  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 42405642 - 42405574
Alignment:
Q  98 tctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctc-ccccagtgacccaaca 165  Q
    |||||| ||| || |||||||||| | |||||||||| ||| | |||||||| ||||||||||||||||    
T  42405642 tctcttgcttgtgcggttgttctagcctcgatgtggacggtcccccgagctccccccagtgacccaaca 42405574  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 30244381 - 30244449
Alignment:
Q  95 gtctctcttacttatgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaa 163  Q
    |||||||| |||| ||||||||||| | | |||||||||||||| | |||||||||||  |||||||||    
T  30244381 gtctctctcacttgtgtggttgttcaagcctcgatgtggatggtcccccgagctccccttgtgacccaa 30244449  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 45754885 - 45754940
Alignment:
Q  33 atgacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcc 88  Q
    |||||||||||||||||||||||| ||||||  ||||||| | ||||||| |||||    
T  45754885 atgacccaacagtggtatcagagccccgttcggcgaagggtatgaccgaggcagcc 45754940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 1085665 - 1085624
Alignment:
Q  93 gcgtctctcttacttatgtggttgttctaacttcgatgtgga 134  Q
    ||||||||||||||| ||||||||||||| | ||||||||||    
T  1085665 gcgtctctcttacttgtgtggttgttctagcctcgatgtgga 1085624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 30253726 - 30253771
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctccgttc 63  Q
    ||||| ||| |||||||||||||||| |||||||||||| ||||||    
T  30253726 ccccaggctcccctcatgacccaacaatggtatcagagccccgttc 30253771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 40094752 - 40094699
Alignment:
Q  35 gacccaacagtggtatcagagctccgttcaacgaagggcacgaccgagacagcc 88  Q
    |||| ||||||||||||||||| | |||| |||||||| ||||||||| |||||    
T  40094752 gacctaacagtggtatcagagccctgttcgacgaagggtacgaccgaggcagcc 40094699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 47129250 - 47129295
Alignment:
Q  18 ccccaagcttccctcatgacccaacagtggtatcagagctccgttc 63  Q
    |||| |||| ||||||||| ||||||||||||||||||| ||||||    
T  47129250 ccccgagctcccctcatgatccaacagtggtatcagagccccgttc 47129295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 30245198 - 30245254
Alignment:
Q  109 tgtggttgttctaacttcgatgtggatggttctccgagctcccccagtgacccaaca 165  Q
    ||||||||||| | | |||||||||||||| | |||||||||||  |||||||||||    
T  30245198 tgtggttgttcaagcctcgatgtggatggtcccccgagctcccctcgtgacccaaca 30245254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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