View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6253_high_5 (Length: 410)

Name: NF6253_high_5
Description: NF6253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6253_high_5
NF6253_high_5
[»] chr7 (1 HSPs)
chr7 (16-97)||(8789665-8789746)
[»] chr8 (4 HSPs)
chr8 (16-97)||(26131065-26131146)
chr8 (109-176)||(26130972-26131039)
chr8 (16-97)||(43218872-43218953)
chr8 (101-190)||(43218971-43219060)
[»] scaffold0112 (2 HSPs)
scaffold0112 (16-95)||(33768-33847)
scaffold0112 (195-241)||(33549-33595)
[»] chr3 (3 HSPs)
chr3 (16-94)||(7643177-7643255)
chr3 (16-55)||(20250708-20250747)
chr3 (109-190)||(20247320-20247401)
[»] chr5 (1 HSPs)
chr5 (135-189)||(15617293-15617347)
[»] scaffold0093 (1 HSPs)
scaffold0093 (16-58)||(17155-17197)
[»] chr1 (1 HSPs)
chr1 (339-399)||(10172534-10172595)


Alignment Details
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 8789746 - 8789665
Alignment:
Q  16 aaaaggacactcgaaacaaatatgagcaaggtcctcatgtggagcatcacaactcacacaatatgtgggacattgcactcct 97  Q
    ||||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||||  | |||||||||||||||||    
T  8789746 aaaaggacatttgaaacaaatatgagcaaggtcctcatgtggaccatcacagctcacacaacttatgggacattgcactcct 8789665  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 26131146 - 26131065
Alignment:
Q  16 aaaaggacactcgaaacaaatatgagcaaggtcctcatgtggagcatcacaactcacacaatatgtgggacattgcactcct 97  Q
    |||||||||||| |||||||||||  |||||||||||||  |  || ||||||||||||||  |||||||||||||||||||    
T  26131146 aaaaggacactcaaaacaaatatgtacaaggtcctcatgcaggccaccacaactcacacaacttgtgggacattgcactcct 26131065  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 26131039 - 26130972
Alignment:
Q  109 gcaagcacccacgacatattcatcaaatcaaattctttacttttgacggcacattcaatctccaaata 176  Q
    |||| ||||||||||| ||||  |||||||||||||||||||||  ||| || |||||||||||||||    
T  26131039 gcaaacacccacgacacattcgccaaatcaaattctttactttttgcggaactttcaatctccaaata 26130972  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 43218872 - 43218953
Alignment:
Q  16 aaaaggacactcgaaacaaatatgagcaaggtcctcatgtggagcatc-acaactcacacaatatgtgggacattgcactcct 97  Q
    |||||||||||| ||||||||||| ||||||||||||||  | ||| | |||||||||||||  |||||||||||||| ||||    
T  43218872 aaaaggacactcaaaacaaatatgtgcaaggtcctcatgcag-gcaacaacaactcacacaacttgtgggacattgcaatcct 43218953  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 43218971 - 43219060
Alignment:
Q  101 tcgagtaagcaagcacccacgacatattcatcaaatcaaattctttacttttgacggcacattcaatctccaaatatcataccaatatcc 190  Q
    ||| ||| |||| ||||||||| | ||||  |||||||||||||||||||| | ||| || |||| |||||||||| || ||||| ||||    
T  43218971 tcgggtaggcaaacacccacgaaacattcgccaaatcaaattctttactttaggcggaactttcagtctccaaataacagaccaaaatcc 43219060  T

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Target: scaffold0112 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 33847 - 33768
Alignment:
Q  16 aaaaggacactcgaaacaaatatgagcaaggtcctcatgtggagcatcacaactcacacaatatgtgggacattgcactc 95  Q
    ||||||||| || |||||||||||||||||||||||||||||| || || |||||||| ||  | ||||||||| |||||    
T  33847 aaaaggacattctaaacaaatatgagcaaggtcctcatgtggaccagcataactcacaaaacttatgggacattacactc 33768  T

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Target: scaffold0112; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 33595 - 33549
Alignment:
Q  195 ggaatataaagcattcttctcaactttccatattaacatgtcatcca 241  Q
    |||||||||| ||||||||||| |||||||||||||| | |||||||    
T  33595 ggaatataaaccattcttctcagctttccatattaacctatcatcca 33549  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 7643177 - 7643255
Alignment:
Q  16 aaaaggacactcgaaacaaatatgagcaaggtcctcatgtggagcatcacaactcacacaatatgtgggacattgcact 94  Q
    |||| ||||||||||||||||||||||||| | || |||  || || ||||||||||||||| | ||||||||||||||    
T  7643177 aaaatgacactcgaaacaaatatgagcaagcttcttatgcagaccaccacaactcacacaatttatgggacattgcact 7643255  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 20250747 - 20250708
Alignment:
Q  16 aaaaggacactcgaaacaaatatgagcaaggtcctcatgt 55  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  20250747 aaaaggacactcaaaacaaatatgtgcaaggtcctcatgt 20250708  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 190
Target Start/End: Complemental strand, 20247401 - 20247320
Alignment:
Q  109 gcaagcacccacgacatattcatcaaatcaaattctttacttttgacggcacattcaatctccaaatatcataccaatatcc 190  Q
    |||| ||||||||||| ||||  |||||||||||||||||||| |  || || |||| |||||||||| || ||||| ||||    
T  20247401 gcaaacacccacgacacattcgccaaatcaaattctttactttaggtggaactttcagtctccaaataacagaccaaaatcc 20247320  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 15617347 - 15617293
Alignment:
Q  135 atcaaattctttacttttgacggcacattcaatctccaaatatcataccaatatc 189  Q
    |||||||||||||||||||  ||||| |||| |||| ||||||||||||||||||    
T  15617347 atcaaattctttacttttggaggcactttcagtctctaaatatcataccaatatc 15617293  T

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Target: scaffold0093 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 17155 - 17197
Alignment:
Q  16 aaaaggacactcgaaacaaatatgagcaaggtcctcatgtgga 58  Q
    ||||||||| || |||||||||||||||| |||||||||||||    
T  17155 aaaaggacattctaaacaaatatgagcaaagtcctcatgtgga 17197  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 10172534 - 10172595
Alignment:
Q  339 gtgtaaaatgatttatgtggatcaaatgctatttg-taaggtttattgttcgcaactcctat 399  Q
    |||| ||||||||| ||||||||||||||| |||| || |||||||||||| |||| |||||    
T  10172534 gtgtgaaatgatttttgtggatcaaatgctttttgatagggtttattgttcacaacccctat 10172595  T

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