View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6253_high_7 (Length: 358)
Name: NF6253_high_7
Description: NF6253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6253_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 5374757 - 5374428
Alignment:
| Q |
11 |
catcatcatctctagctgattttgattctgttgtttcatctattggaccaagtgctgcttcatacccttttaagaaaaaccttgcacctatgagtttttt |
110 |
Q |
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| T |
5374757 |
catcatcatctctagctgattttgattctgttgtttcatctattggaccaagtgctgcttcatacccttttaagaaaaaccttgcacctatgagtttttt |
5374658 |
T |
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| Q |
111 |
gttgcagtgtgacgaattcatgttgttaccagtttcacatacacctttccaattacttggtattggacctagtcctgtgtcatctaagctttttagctct |
210 |
Q |
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| T |
5374657 |
gttgcagtgtgatgaattcatgttgttaccagtttcacatacacctttccaattacttggtattggacctagtcctgtgtcatctaagctttttagctct |
5374558 |
T |
|
| Q |
211 |
ggccatataccagtgtcaagaataccaatgattacttgactttgttgtctagagtgaggtaaaagagtgtttgtttttggcaaaccaaggaactgtggtg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374557 |
ggccatataccagtgtcaagaataccaatgattacttgactttgttgtctagagtgaggtaaaagagtgtttgtttttggcaaaccaaggaactgtggtg |
5374458 |
T |
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| Q |
311 |
ttcttgttgtgtgaagttggtatctgagtt |
340 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5374457 |
ttcttgttgtgtgaagttggtatctgagtt |
5374428 |
T |
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